RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PTGES2Q9H7Z7 377 aa12.58□□□□□ -0.4
UPF1-205ENST00000598209 CAMK2AQ9UQM7 478 aa12.58□□□□□ -0.4
UPF1-205ENST00000598209 RPH3AQ9Y2J0 694 aaPredicted RBP12.58□□□□□ -0.4
UPF1-205ENST00000598209 IGLV3-32A0A0A0MS00 114 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 A0A1W2PQD3 144 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 FAM234BA2RU67 622 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 AHRRA9YTQ3 701 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 RFXANKO14593 260 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 GMFGO60234 142 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 AK1P00568 194 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 C1QCP02747 245 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 GSNP06396 782 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 HOXD4P09016 255 aaPredicted RBP12.57□□□□□ -0.4
UPF1-205ENST00000598209 OR12D1P0DN82 309 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 HK1P19367 917 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 PTGER4P35408 488 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 DCTP40126 519 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 MRPL19P49406 292 aaKnown RBP12.57□□□□□ -0.4
UPF1-205ENST00000598209 KHKP50053 298 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 GFRA1P56159 465 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 ART3Q13508 389 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 GANABQ14697 944 aaKnown RBP12.57□□□□□ -0.4
UPF1-205ENST00000598209 CDSNQ15517 529 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 FLYWCH1Q4VC44 716 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 TIGD2Q4W5G0 525 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 DNAJC14Q6Y2X3 702 aaPredicted RBP12.57□□□□□ -0.4
UPF1-205ENST00000598209 MSANTD1Q6ZTZ1 278 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 C16orf62Q7Z3J2 963 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 PM20D2Q8IYS1 436 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 ZNF527Q8NB42 609 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 CHDHQ8NE62 594 aaPredicted RBP12.57□□□□□ -0.4
UPF1-205ENST00000598209 RFWD2Q8NHY2 731 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 XAGE5Q8WWM1 108 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 RND1Q92730 232 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 RAB8BQ92930 207 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 SDCCAG3Q96C92 435 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 C1GALT1C1Q96EU7 318 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 WDYHV1Q96HA8 205 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 DOCK7Q96N67 2140 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 SFXN2Q96NB2 322 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 TTYH2Q9BSA4 534 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 PRDM14Q9GZV8 571 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 HOXD1Q9GZZ0 328 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 RMND5AQ9H871 391 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 HHATLQ9HCP6 504 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 NPHS2Q9NP85 383 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 MED4Q9NPJ6 270 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 EXD2Q9NVH0 621 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 COQ3Q9NZJ6 369 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 HEATR5AQ86XA9 2040 aa12.57□□□□□ -0.4
UPF1-205ENST00000598209 AGR2O95994 175 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 GLI4P10075 376 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 COL8A1P27658 744 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 ATP12AP54707 1039 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 B3GALT5-AS1P59052 145 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 CD226Q15762 336 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 ARHGAP11BQ3KRB8 267 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 ATAD3BQ5T9A4 648 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 HEPHL1Q6MZM0 1159 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 AAGABQ6PD74 315 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 ENPP6Q6UWR7 440 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 RNF130Q86XS8 419 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 MISPQ8IVT2 679 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 OR10Q1Q8NGQ4 319 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 STON2Q8WXE9 905 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 VPS33AQ96AX1 596 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 ITCHQ96J02 903 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 DCTN4Q9UJW0 460 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 RNF6Q9Y252 685 aa12.56□□□□□ -0.4
UPF1-205ENST00000598209 UTP20O75691 2785 aaKnown RBP12.56□□□□□ -0.4
UPF1-205ENST00000598209 PRSS44E7EML9 344 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 NPIPB9F8W1W9 429 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ATP8B1O43520 1251 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 STX11O75558 287 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 CLDN14O95500 239 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ANP32DO95626 131 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 CPN1P15169 458 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 CHMP24386 653 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 MSX1P28360 303 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 STARP49675 285 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 LHX2P50458 406 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 RNF144AP50876 292 aaPredicted RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 ATP4BP51164 291 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 SQLEQ14534 574 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 SF3B4Q15427 424 aaKnown RBP eCLIP12.55□□□□□ -0.43e-7■■□□□ 14
UPF1-205ENST00000598209 GPR68Q15743 365 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ACSF3Q4G176 576 aaPredicted RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 KLHL26Q53HC5 615 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.55□□□□□ -0.4
UPF1-205ENST00000598209 RAET1LQ5VY80 246 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 OLIG3Q7RTU3 272 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 MTERF4Q7Z6M4 381 aaKnown RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 CCDC71Q8IV32 467 aaPredicted RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 FUNDC1Q8IVP5 155 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ZNF614Q8N883 585 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 PNPT1Q8TCS8 783 aaKnown RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 PHOSPHO1Q8TCT1 267 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 CA5BP1Q8WTZ4 195 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ASB5Q8WWX0 329 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 SH3YL1Q96HL8 342 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms