RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LRTM1Q9HBL6 345 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 RRAGDQ9NQL2 400 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-212ENST00000597995 PLSCR4Q9NRQ2 329 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 C1orf109Q9NX04 203 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 MED11Q9P086 117 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 MID2Q9UJV3 735 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 AP4B1Q9Y6B7 739 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 RTTNQ86VV8 2226 aa11.25□□□□□ -0.61
TRIM28-212ENST00000597995 OR2M5A3KFT3 312 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 C17orf51A8MQB3 221 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 INAFM1C9JVW0 142 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 H0YC42 278 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 UPK1AO00322 258 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 SLC28A1O00337 649 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 LSM1O15116 133 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 TYROBPO43914 113 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 NPHS1O60500 1241 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 COQ9O75208 318 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 PSMG1O95456 288 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 FGF4P08620 206 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 LINC00032P0C843 101 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 FCGR2AP12318 317 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 SDC1P18827 310 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 ETV4P43268 484 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 CLK3P49761 638 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 TPD52P55327 224 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 IFFO1Q0D2I5 559 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 PON3Q15166 354 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 BEX5Q5H9J7 111 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 TMEM107Q6UX40 140 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 C22orf34Q6ZV56 151 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 MREGQ8N565 214 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 GFM2Q969S9 779 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 C1GALT1C1Q96EU7 318 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 METTL2AQ96IZ6 378 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 PARD6BQ9BYG5 372 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 KLHL4Q9C0H6 718 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF701Q9NV72 531 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 FAM120CQ9NX05 1096 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 SENP1Q9P0U3 644 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 STOML1Q9UBI4 398 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 GIMAP2Q9UG22 337 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 BAIAP2L1Q9UHR4 511 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 MRTO4Q9UKD2 239 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 C19orf53Q9UNZ5 99 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 WBP11Q9Y2W2 641 aaKnown RBP11.24□□□□□ -0.61
TRIM28-212ENST00000597995 TRAF6Q9Y4K3 522 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 PCNX3Q9H6A9 2034 aa11.24□□□□□ -0.61
TRIM28-212ENST00000597995 USF3Q68DE3 2245 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-212ENST00000597995 SEC14L5O43304 696 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 KLF4O43474 513 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 RGS14O43566 566 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 THBDP07204 575 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 IL11P20809 199 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 NR1H2P55055 460 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 CLDN20P56880 219 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF844Q08AG5 666 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 C17orf67Q0P5P2 114 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF155Q12901 538 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-212ENST00000597995 SGCBQ16585 318 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 DECR1Q16698 335 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 IKBIPQ70UQ0 350 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF551Q7Z340 670 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-212ENST00000597995 OR2L13Q8N349 312 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 OR6K3Q8NGY3 331 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 CLHC1Q8NHS4 586 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 DUSP19Q8WTR2 217 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 TMEM171Q8WVE6 324 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 TWIST2Q8WVJ9 160 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 CIDECQ96AQ7 238 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-212ENST00000597995 ELP4Q96EB1 424 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 C3orf30Q96M34 536 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 RTN4RQ9BZR6 473 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 IQCGQ9H095 443 aaKnown RBP11.23□□□□□ -0.61
TRIM28-212ENST00000597995 OR10A4Q9H209 315 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 CXorf56Q9H5V9 222 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 HHATLQ9HCP6 504 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 FANCFQ9NPI8 374 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 MIEF1Q9NQG6 463 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 FLRT3Q9NZU0 649 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 EMC9Q9Y3B6 208 aa11.23□□□□□ -0.61
TRIM28-212ENST00000597995 COL6A5A8TX70 2615 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 IGLV3-32A0A0A0MS00 114 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 H3BML4 177 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 PIP5K1BO14986 540 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 AKAP10O43572 662 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 TBX19O60806 448 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 AQP8O94778 261 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 IL33O95760 270 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 BPGMP07738 259 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 FRKP42685 505 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 PSMD4P55036 377 aaKnown RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 RPL38P63173 70 aaKnown RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 PDE7AQ13946 482 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 TMEM44Q2T9K0 475 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 XKR7Q5GH72 579 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 SH2D4BQ5SQS7 431 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ANKRD34AQ69YU3 496 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF704Q6ZNC4 412 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms