RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 TRMT61AQ96FX7 289 aaKnown RBP8.89□□□□□ -0.99
LIG1-209ENST00000596104 AMDHD1Q96NU7 426 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 KLHDC3Q9BQ90 382 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 CDC42EP4Q9H3Q1 356 aaKnown RBP8.89□□□□□ -0.99
LIG1-209ENST00000596104 FANCFQ9NPI8 374 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 STOML1Q9UBI4 398 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 MRTO4Q9UKD2 239 aaKnown RBP8.89□□□□□ -0.99
LIG1-209ENST00000596104 MCTS1Q9ULC4 181 aaKnown RBP8.89□□□□□ -0.99
LIG1-209ENST00000596104 GRID1Q9ULK0 1009 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 TIMM22Q9Y584 194 aa8.89□□□□□ -0.99
LIG1-209ENST00000596104 A0A1W2PRB8 838 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TTC36A6NLP5 189 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TNFSF11O14788 317 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 CLOCKO15516 846 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 NDUFS7O75251 213 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 SYNGR4O95473 234 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 OXSR1O95747 527 aaPredicted RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 IGHV4-39P01824 125 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 OPN1LWP04000 364 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ENO1P06733 434 aaKnown RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 TUBBP07437 444 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 NGFRP08138 427 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 NTSP30990 170 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 GABRA3P34903 492 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 CDKN1AP38936 164 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 BTKQ06187 659 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ZNHIT3Q15649 155 aaPredicted RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 TSC22D1Q15714 1073 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TAB1Q15750 504 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 PLPPR5Q32ZL2 321 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 FIGNL1Q6PIW4 674 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TFAP2EQ6VUC0 442 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ESPNLQ6ZVH7 1005 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ATG4DQ86TL0 474 aaPredicted RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 POC1BQ8TC44 478 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ACTRT2Q8TDY3 377 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 RNF128Q8TEB7 428 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 SMAP2Q8WU79 429 aaPredicted RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 PIK3R3Q92569 461 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 SLC9A6Q92581 669 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 FBXW5Q969U6 566 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 RNF145Q96MT1 663 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 KCNA7Q96RP8 456 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TACO1Q9BSH4 297 aaKnown RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 C12orf49Q9H741 205 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TMEM185BQ9H7F4 350 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 MYNNQ9NPC7 610 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 MIEF1Q9NQG6 463 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 MED17Q9NVC6 651 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 TMEM216Q9P0N5 145 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 ZNF180Q9UJW8 692 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 LIPT1Q9Y234 373 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 MAGED1Q9Y5V3 778 aaPredicted RBP8.88□□□□□ -0.99
LIG1-209ENST00000596104 ABCA1O95477 2261 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 PRR14LQ5THK1 2151 aa8.88□□□□□ -0.99
LIG1-209ENST00000596104 CHD3Q12873 2000 aaKnown RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 A0A096LNT2 108 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 NDUFB5O43674 189 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ADAM11O75078 769 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 NKX2-2O95096 273 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 KCNH1O95259 989 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 NTN1O95631 604 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 IFNA2P01563 188 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 TP53P04637 393 aaPredicted RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 CD3EP07766 207 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 IMPDH1P20839 514 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ATP5F1P24539 256 aaPredicted RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 ADH6P28332 368 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 SHC1P29353 583 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 FOXA1P55317 472 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 PKNOX1P55347 436 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 SLC18A2Q05940 514 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 LCP2Q13094 533 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 SLC29A2Q14542 456 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ZNF239Q16600 458 aaKnown RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 PGGHGQ32M88 737 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ZNF672Q499Z4 452 aaPredicted RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 GLE1Q53GS7 698 aaKnown RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 TEX35Q5T0J7 233 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 SFRP5Q5T4F7 317 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 CPTPQ5TA50 214 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 HBMQ6B0K9 141 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ALKBH2Q6NS38 261 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ZNF551Q7Z340 670 aaPredicted RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 NUFIP2Q7Z417 695 aaKnown RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 ZAR1Q86SH2 424 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 EXOC3L1Q86VI1 746 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 GATSQ8NAP1 163 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 CDC26Q8NHZ8 85 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ABHD3Q8WU67 409 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 TMEM158Q8WZ71 300 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 ROBO4Q8WZ75 1007 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 OSTF1Q92882 214 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 GTPBP3Q969Y2 492 aaKnown RBP8.87□□□□□ -0.99
LIG1-209ENST00000596104 ZBTB8AQ96BR9 441 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 KLHL15Q96M94 604 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 HDHD5Q9BXW7 423 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 C3orf14Q9HBI5 128 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 LRTM1Q9HBL6 345 aa8.87□□□□□ -0.99
LIG1-209ENST00000596104 EQTNQ9NQ60 294 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms