RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LINC00167Q96N53 147 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM111AQ96PZ2 611 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 IL4I1Q96RQ9 567 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 CNPY3Q9BT09 278 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 POLR3FQ9H1D9 316 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 PTGES2Q9H7Z7 377 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 COG4Q9H9E3 785 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 ATP6V1HQ9UI12 483 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 SAMD4AQ9UPU9 718 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 CCDC7Q96M83 1385 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 LRRC30A6NM36 301 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ANKRD30BLA7E2S9 258 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 C19orf81C9J6K1 198 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 LYPLA1O75608 230 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 GPX5O75715 221 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 KRT6AP02538 564 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 KRT6BP04259 564 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 CA3P07451 260 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 STSP08842 583 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 GAP43P17677 238 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 FUT1P19526 365 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ADORA2BP29275 332 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ASMTP46597 345 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 RABIFP47224 123 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 RPL29P47914 159 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 KRT6CP48668 564 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 MRPS11P82912 194 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 OC90Q02509 493 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM52BQ4KMG9 183 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM120AOSQ5T036 256 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 SPATA46Q5T0L3 261 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 OTPQ5XKR4 325 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 SERPINA9Q86WD7 417 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 HDDC3Q8N4P3 179 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 BCORP1Q8N888 145 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 OR2T33Q8NG76 320 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 OR8H1Q8NGG4 311 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ANKRD49Q8WVL7 239 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 IL1F10Q8WWZ1 152 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 HAVCR1Q96D42 359 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 FEM1AQ9BSK4 669 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 TBCDQ9BTW9 1192 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ACTR8Q9H981 624 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 CAB39LQ9H9S4 337 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 ANKMY1Q9P2S6 941 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 SPRR3Q9UBC9 169 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 RPS6KB2Q9UBS0 482 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 CRLS1Q9UJA2 301 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 FOXJ3Q9UPW0 622 aa3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 PIN4Q9Y237 131 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-204ENST00000581226 KRT87PA6NCN2 255 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM74A7A6NL05 159 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 K7ENP7 123 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 EMC8O43402 210 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 TBL1XO60907 577 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 STX11O75558 287 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 IGLV1-47P01700 117 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 VDAC1P21796 283 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 AXLP30530 894 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 CYLC1P35663 651 aaPredicted RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 LIM2P55344 173 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 WNT4P56705 351 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 OTUD4Q01804 1114 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 CAPRIN1Q14444 709 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 CEBPEQ15744 281 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 ADPRMQ3LIE5 342 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM74A3Q4VXF1 159 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 HSD17B13Q7Z5P4 300 aaPredicted RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 ERI1Q8IV48 349 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 ZNF619Q8N2I2 560 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 OR52B4Q8NGK2 314 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 OR2A12Q8NGT7 310 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 NEIL2Q969S2 332 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 FGGYQ96C11 551 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 ZNF184Q99676 751 aaPredicted RBP3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 CCSER1Q9C0I3 900 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 HSD3B7Q9H2F3 369 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 VAT1LQ9HCJ6 419 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 ZNF221Q9UK13 617 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 AP4B1Q9Y6B7 739 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 PARD3Q8TEW0 1356 aa3.1□□□□□ -1.91
SMCHD1-204ENST00000581226 WI2-2373I1.2A0A1W2PRP0 233 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM110-MUSTN1A8MSY1 372 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 B4DXG7 233 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 PTBP3O95758 552 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 SEMG1P04279 462 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 IL10P22301 178 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 ATP5A1P25705 553 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 STARP49675 285 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 EFNA3P52797 238 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 BPIFB3P59826 476 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 GNB2P62879 340 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 BDH1Q02338 343 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 ELAVL3Q14576 367 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 LRRC36Q1X8D7 754 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 TOR1AIP1Q5JTV8 583 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 PVRIGQ6DKI7 326 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 LANCL3Q6ZV70 420 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM110Q86TL2 294 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 MISPQ8IVT2 679 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms