RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 BTNL2Q9UIR0 455 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 FAM215AQ9Y5M1 114 aa17.71■□□□□ 0.43
SS18-209ENST00000578595 DUXAA6NLW8 204 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 FAM47E-STBD1D6RA91 191 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 TGDSO95455 350 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 ACTL6AO96019 429 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 IL6P05231 212 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 GSNP06396 782 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 TBXA2RP21731 343 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 HTR1EP28566 365 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 DCTP40126 519 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 IDH3AP50213 366 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 ART3Q13508 389 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 RCAN2Q14206 197 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 GPR68Q15743 365 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 VASNQ6EMK4 673 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 MED12LQ86YW9 2145 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 OR9I1Q8NGQ6 314 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 FAM110BQ8TC76 370 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 PHOSPHO1Q8TCT1 267 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 RAB8BQ92930 207 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 CCDC115Q96NT0 180 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 TRIB1Q96RU8 372 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 TTYH2Q9BSA4 534 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 INPP5KQ9BT40 448 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 SERHL2Q9H4I8 314 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 RNF6Q9Y252 685 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 VDAC3Q9Y277 283 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 HCFC1P51610 2035 aa17.7■□□□□ 0.42
SS18-209ENST00000578595 CCDC154A6NI56 674 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 ALG1L2C9J202 215 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 H3BNH8 94 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 RFXANKO14593 260 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 SCN2BO60939 215 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 SOX30O94993 753 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 OR12D1P0DN82 309 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 GLI4P10075 376 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 LCN1P31025 176 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 PTGER4P35408 488 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 CDKN2CP42773 168 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 STARP49675 285 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 POLR2JP52435 117 aaKnown RBP17.69■□□□□ 0.42
SS18-209ENST00000578595 HPCAP84074 193 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 LRRC74AQ0VAA2 488 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 GANABQ14697 944 aaKnown RBP17.69■□□□□ 0.42
SS18-209ENST00000578595 SF3B4Q15427 424 aaKnown RBP eCLIP17.69■□□□□ 0.42
SS18-209ENST00000578595 EXOSC6Q5RKV6 272 aaKnown RBP17.69■□□□□ 0.42
SS18-209ENST00000578595 C6orf10Q5SRN2 563 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 RTL6Q6ICC9 239 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 APOOLQ6UXV4 268 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 TMCO5AQ8N6Q1 288 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 FADS6Q8N9I5 356 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 PNPT1Q8TCS8 783 aaKnown RBP17.69■□□□□ 0.42
SS18-209ENST00000578595 XAGE5Q8WWM1 108 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 ASB5Q8WWX0 329 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 SMPDL3BQ92485 455 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 RMND5AQ9H871 391 aa17.69■□□□□ 0.42
SS18-209ENST00000578595 H3BML4 177 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 GTPBP1O00178 669 aaKnown RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 HCRTR2O43614 444 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 NUDT14O95848 222 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 AK1P00568 194 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 NGFRP08138 427 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 HOXD4P09016 255 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 POU3F2P20265 443 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 AGAP20933 346 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 CHRNB4P30926 498 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 ZNF41P51814 821 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 ACSF3Q4G176 576 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 GPAT3Q53EU6 434 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 NHSL2Q5HYW2 709 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 SAXO2Q658L1 398 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 ZNF787Q6DD87 383 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 UBQLNLQ8IYU4 475 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 ARFGAP2Q8N6H7 521 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 OR5M1Q8NGP8 315 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 C1GALT1C1Q96EU7 318 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 CCDC28BQ9BUN5 200 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 PRDM14Q9GZV8 571 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 HOXD1Q9GZZ0 328 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 HHATLQ9HCP6 504 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 NPHS2Q9NP85 383 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 SDR39U1Q9NRG7 319 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 DCTN4Q9UJW0 460 aa17.68■□□□□ 0.42
SS18-209ENST00000578595 KLF2Q9Y5W3 355 aaPredicted RBP17.68■□□□□ 0.42
SS18-209ENST00000578595 AHRRA9YTQ3 701 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 B4DXG7 233 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 AGR2O95994 175 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 SNRPB2P08579 225 aaKnown RBP17.67■□□□□ 0.42
SS18-209ENST00000578595 GRNP28799 593 aaKnown RBP17.67■□□□□ 0.42
SS18-209ENST00000578595 ANXA11P50995 505 aaKnown RBP17.67■□□□□ 0.42
SS18-209ENST00000578595 CCR4P51679 360 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 CDSNQ15517 529 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 ZNF630Q2M218 657 aaPredicted RBP17.67■□□□□ 0.42
SS18-209ENST00000578595 CHMP1BQ7LBR1 199 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 OLIG3Q7RTU3 272 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 RNF130Q86XS8 419 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 MISPQ8IVT2 679 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 RFWD2Q8NHY2 731 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 VPS33AQ96AX1 596 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms