RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SATB2Q9UPW6 733 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 HS3ST3A1Q9Y663 406 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CDH10Q9Y6N8 788 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 FAM221BA6H8Z2 402 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 CYR61O00622 381 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 CDC42EP2O14613 210 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 RGS5O15539 181 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 PLOD3O60568 738 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 STX11O75558 287 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 GPR75O95800 540 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 EIF2S1P05198 315 aaKnown RBP9.38□□□□□ -0.91
VPS53-220ENST00000576149 DBIP07108 87 aaKnown RBP9.38□□□□□ -0.91
VPS53-220ENST00000576149 PVRP15151 417 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 EIF2B2P49770 351 aaKnown RBP9.38□□□□□ -0.91
VPS53-220ENST00000576149 COPZ1P61923 177 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 PSPHP78330 225 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 RAB30Q15771 203 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 MANEAQ5SRI9 462 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 DCST2Q5T1A1 773 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 C22orf42Q6IC83 251 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 RNF44Q7L0R7 432 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 GDPD3Q7L5L3 318 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 SHFQ7M4L6 423 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 RANBP3LQ86VV4 465 aaPredicted RBP9.38□□□□□ -0.91
VPS53-220ENST00000576149 CDRT4Q8N9R6 151 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 TMEM52Q8NDY8 209 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 RPLP0P6Q8NHW5 317 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 GPBAR1Q8TDU6 330 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 GPR151Q8TDV0 419 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 DOK4Q8TEW6 326 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 TMEM203Q969S6 136 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 ARHGAP9Q9BRR9 750 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 TPK1Q9H3S4 243 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 V9GYH0 126 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 SPACA6W5XKT8 324 aa9.38□□□□□ -0.91
VPS53-220ENST00000576149 TCRBV21S2A2A0A5A6 115 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 C10orf142B7Z368 130 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TNFP01375 233 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 PRG2P13727 222 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 GABRG2P18507 467 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SLC1A3P43003 542 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TGM4P49221 684 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 RPS25P62851 125 aaKnown RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 UBE2IP63279 158 aaKnown RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 MXD1Q05195 221 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 PRICKLE4Q2TBC4 344 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 EOGTQ5NDL2 527 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 DESI1Q6ICB0 168 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 ZCCHC12Q6PEW1 402 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TMPRSS11AQ6ZMR5 421 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 LAX1Q8IWV1 398 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 GALNT12Q8IXK2 581 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SLC22A18ASQ8N1D0 253 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 ZNF655Q8N720 491 aaPredicted RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 OR2T33Q8NG76 320 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 OR13H1Q8NG92 308 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 OR4F15Q8NGB8 312 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 OR5T3Q8NGG3 340 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 UFD1Q92890 307 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 C1GALT1C1Q96EU7 318 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 KCTD7Q96MP8 289 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 STACQ99469 402 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MED18Q9BUE0 208 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 KRCC1Q9NPI7 259 aaPredicted RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 SACM1LQ9NTJ5 587 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 HRASLS2Q9NWW9 162 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 KCNE5Q9UJ90 142 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 EXOGQ9Y2C4 368 aaKnown RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 YARS2Q9Y2Z4 477 aaKnown RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 A0A0J9YY10 115 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TRAPPC13A5PLN9 417 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SLC30A4O14863 429 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 GALR3O60755 368 aaPredicted RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 HMGN1P05114 100 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 IFI6P09912 130 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 NID1P14543 1247 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 NT5EP21589 574 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 HTR2AP28223 471 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 GABRA5P31644 462 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 CD79BP40259 229 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MAP3K8P41279 467 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MGAT2Q10469 447 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 NXNL2Q5VZ03 156 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 QSOX2Q6ZRP7 698 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 ABI3BPQ7Z7G0 1075 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 LHFPL3Q86UP9 236 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SFTPA2Q8IWL1 248 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SLC7A5P1Q8MH63 180 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 COX18Q8N8Q8 333 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TXNDC15Q96J42 360 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MSLNLQ96KJ4 702 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SAMD8Q96LT4 415 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 ZNF649Q9BS31 505 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MCOLN1Q9GZU1 580 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 TCEAL2Q9H3H9 227 aaPredicted RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 RYDENQ9NUL5 291 aaKnown RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 FBXO34Q9NWN3 711 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 C14orf119Q9NWQ9 140 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 IL20RAQ9UHF4 553 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms