RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 LACC1Q8IV20 430 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 SLC15A4Q8N697 577 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF614Q8N883 585 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 OR6T1Q8NGN1 323 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 SLC22A8Q8TCC7 542 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 NR4A3Q92570 626 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 EPYCQ99645 322 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 WFDC6Q9BQY6 131 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 TACO1Q9BSH4 297 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 VCXQ9H320 206 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 COQ10BQ9H8M1 238 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 RYDENQ9NUL5 291 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 RLIMQ9NVW2 624 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 VNN3Q9NY84 501 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 IL17BQ9UHF5 180 aa12.6□□□□□ -0.39
CCDC40-209ENST00000573474 MRPS18BQ9Y676 258 aaKnown RBP12.6□□□□□ -0.39
CCDC40-209ENST00000573474 SERINC4A6NH21 518 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 G3V2T6 193 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 J3KTA2 159 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SCDO00767 359 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 NADKO95544 446 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 NGFRP08138 427 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 CELA2AP08217 269 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF26P17031 533 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 FPR1P21462 350 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 RRM2P31350 389 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ADH7P40394 386 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ARHGDIAP52565 204 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SMIM11AP58511 58 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SPIBQ01892 262 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 NPTX1Q15818 432 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SHQ1Q6PI26 577 aaKnown RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 C16orf47Q6ZP98 133 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF605Q86T29 641 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 EPHX4Q8IUS5 362 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 KBTBD2Q8IY47 623 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 CBR4Q8N4T8 237 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 PACRGLQ8N7B6 248 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ADAMTS17Q8TE56 1095 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SLC35B4Q969S0 331 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SDCCAG3Q96C92 435 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 NRBF2Q96F24 287 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ZBTB20Q9HC78 741 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 ACAD8Q9UKU7 415 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SLC35A3Q9Y2D2 325 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 SAMHD1Q9Y3Z3 626 aaKnown RBP12.59□□□□□ -0.39
CCDC40-209ENST00000573474 TESMINQ9Y4I5 508 aa12.59□□□□□ -0.39
CCDC40-209ENST00000573474 DMXL1Q9Y485 3027 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TRABD2BA6NFA1 517 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 H0YJX3 145 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 H3BNH8 94 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 PDLIM1O00151 329 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TNFRSF11BO00300 401 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 SOCS2O14508 198 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 AP3D1O14617 1153 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 FFAR1O14842 300 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 FRS3O43559 492 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 UGT2B11O75310 529 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 OR2J2O76002 312 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 RASAL1O95294 804 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 OXSR1O95747 527 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 SERPINA7P05543 415 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 ENDOUP21128 410 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 IFNA8P32881 189 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TMED10P49755 219 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 RNF144AP50876 292 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 HMGA2P52926 109 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 IST1P53990 364 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 CDH12P55289 794 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 ATP1A4Q13733 1029 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TGIF1Q15583 401 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 IZUMO2Q6UXV1 221 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 NUP54Q7Z3B4 507 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TMEM179BQ7Z7N9 219 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 STK32CQ86UX6 486 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 RANBP3LQ86VV4 465 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 GALNT4Q8N4A0 578 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 PHF10Q8WUB8 498 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 CNOT9Q92600 299 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 TTC9Q92623 222 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 NXPE2Q96DL1 559 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 DHRS1Q96LJ7 313 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 MCHR1Q99705 422 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 SLC29A1Q99808 456 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 FNDC11Q9BVV2 318 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 OSBPL10Q9BXB5 764 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 POLR2J2Q9GZM3 115 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 POLR2J3Q9H1A7 115 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 NMNAT1Q9HAN9 279 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 ACER3Q9NUN7 267 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 FLRT3Q9NZU0 649 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 A4GNTQ9UNA3 340 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 YARS2Q9Y2Z4 477 aaKnown RBP12.58□□□□□ -0.4
CCDC40-209ENST00000573474 LYVE1Q9Y5Y7 322 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 U3KQV3 271 aa12.58□□□□□ -0.4
CCDC40-209ENST00000573474 A0A1W2PQD3 144 aa12.57□□□□□ -0.4
CCDC40-209ENST00000573474 TPST2O60704 377 aa12.57□□□□□ -0.4
CCDC40-209ENST00000573474 ZNF354AO60765 605 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-209ENST00000573474 FMO6PO60774 539 aa12.57□□□□□ -0.4
CCDC40-209ENST00000573474 ICOSLGO75144 302 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms