RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RPL29P47914 159 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 NUMBP49757 651 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 SRYQ05066 204 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 PPP1R8Q12972 351 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 DAZ2Q13117 558 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 GPNMBQ14956 572 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 PARP6Q2NL67 630 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 CXCL17Q6UXB2 119 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 KIR2DL5AQ8N109 375 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 LRRC17Q8N6Y2 441 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 Q8N9W7 124 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 LEMD2Q8NC56 503 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 IL1F10Q8WWZ1 152 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 PSMG2Q969U7 264 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 VMP1Q96GC9 406 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 MBOAT4Q96T53 435 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 COQ7Q99807 217 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 CBWD1Q9BRT8 395 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 ZDHHC11Q9H8X9 412 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 SH2D2AQ9NP31 389 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 MID1IP1Q9NPA3 183 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 DAZ3Q9NR90 486 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 MMP26Q9NRE1 261 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 HOMER3Q9NSC5 361 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 OR1A1Q9P1Q5 309 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 FZR1Q9UM11 496 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 NUDCQ9Y266 331 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 WDR45Q9Y484 360 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 ZNFX1Q9P2E3 1918 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 ARHGAP21Q5T5U3 1957 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 LTBP1Q14766 1721 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 RLFQ13129 1914 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 A0A0J9YXY3 114 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 LRCOL1A6NCL2 159 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 NKX2-6A6NCS4 301 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ZSCAN5BA6NJL1 495 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FAM166BA8MTA8 275 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 KLF8O95600 359 aaPredicted RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 OLFM2O95897 454 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 JCHAINP01591 159 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 OR8U8P0C7N1 319 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 HSPA1LP34931 641 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 GCKP35557 465 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 PMELP40967 661 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 MAGEA4P43358 317 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 HERVK_113P63132 956 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ERVK-8P63133 956 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 PAX5Q02548 391 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FUT7Q11130 342 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ZP4Q12836 540 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 TSTA3Q13630 321 aaPredicted RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 ARFRP1Q13795 201 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 MORF4L2Q15014 288 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 PTGES3Q15185 160 aaKnown RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 AANATQ16613 207 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ZNF630Q2M218 657 aaPredicted RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 LRIT3Q3SXY7 679 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FAM120AOSQ5T036 256 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 SLX4IPQ5VYV7 408 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ARSKQ6UWY0 536 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ZNF562Q6V9R5 426 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 WDR88Q6ZMY6 472 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 P4HA3Q7Z4N8 544 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 IFNEQ86WN2 208 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 PEX5LQ8IYB4 626 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 CERS5Q8N5B7 392 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FAM71E2Q8N5Q1 922 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 CCNYQ8ND76 341 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 MDS2Q8NDY4 140 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 OR2A12Q8NGT7 310 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 NEIL3Q8TAT5 605 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 URGCPQ8TCY9 931 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ART4Q93070 314 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 MYDGFQ969H8 173 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ADIPOR1Q96A54 375 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 HAVCR1Q96D42 359 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FAM210BQ96KR6 192 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ERVK-6Q9BXR3 956 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 FANCFQ9NPI8 374 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 PRMT8Q9NR22 394 aaPredicted RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 UTP6Q9NYH9 597 aaKnown RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 GHRLQ9UBU3 117 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 IL20RAQ9UHF4 553 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 ZNF225Q9UK10 706 aa1.66□□□□□ -2.14
VPS35-207ENST00000568191 SAMD4AQ9UPU9 718 aaKnown RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 TDRKHQ9Y2W6 561 aaKnown RBP1.66□□□□□ -2.14
VPS35-207ENST00000568191 IGKV1D-17A0A075B6S4 117 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TUBAL3A6NHL2 446 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 SAGE2PA6NJ88 616 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TMX2-CTNND1H3BSU7 103 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 PPIHO43447 177 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 HSF2BPO75031 334 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TRIM3O75382 744 aaPredicted RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 SCRG1O75711 98 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 INSP01308 110 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 CHRNA1P02708 482 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 MMP1P03956 469 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 ADRB3P13945 408 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 HNRNPA2B1P22626 353 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 PRDX3P30048 256 aaKnown RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms