RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ALOX5P09917 674 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 CEACAM8P31997 349 aaPredicted RBP12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 ZNF136P52737 540 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 GFRA1P56159 465 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 DLX5P56178 289 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 DSCR4P56555 118 aaPredicted RBP12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 PRR5P85299 388 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 VPS26BQ4G0F5 336 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 MFSD12Q6NUT3 480 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 AAGABQ6PD74 315 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 ZAR1Q86SH2 424 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 TMEM200AQ86VY9 491 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 DMRTC2Q8IXT2 367 aaPredicted RBP12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 OR5AK3PQ8NH89 298 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 RNF138Q8WVD3 245 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 DTNBP1Q96EV8 351 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 GIMAP5Q96F15 307 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 ZNF559Q9BR84 538 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 DPY30Q9C005 99 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 BHLHE41Q9C0J9 482 aaPredicted RBP12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 CXorf36Q9H7Y0 433 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 FAM120CQ9NX05 1096 aaKnown RBP12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 GIN1Q9NXP7 522 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 NTMQ9P121 344 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 ABCG2Q9UNQ0 655 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 GPR45Q9Y5Y3 372 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 APCP25054 2843 aa12.35□□□□□ -0.43
VPS9D1-204ENST00000565023 MTORP42345 2549 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 NPIPA5A0A0B4J1W7 369 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 CD8B2A6NJW9 211 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 TTC36A6NLP5 189 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 NPIPA7E9PJI5 369 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 H3BML4 177 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 DYNC1I1O14576 645 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 EDF1O60869 148 aaKnown RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 KCNK2O95069 426 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 HMGN2P05204 90 aaKnown RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 NPIPA8P0DM63 369 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 TMIGD3P0DMS9 266 aaPredicted RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 IGFBP2P18065 325 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 TIMP3P35625 211 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 PRIM2P49643 509 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 IDH3AP50213 366 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 LHX2P50458 406 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 POU6F2P78424 691 aaPredicted RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 FOXF2Q12947 444 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 LSM12Q3MHD2 195 aaKnown RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 NXNQ6DKJ4 435 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 PPP4R4Q6NUP7 873 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 APOOLQ6UXV4 268 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 P4HA3Q7Z4N8 544 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 GRAMD2AQ8IUY3 354 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 ZZZ3Q8IYH5 903 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 GCNT2Q8N0V5 402 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 FADS6Q8N9I5 356 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 OR8J2Q8NGG1 315 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 PSMA8Q8TAA3 256 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 OR5P2Q8WZ92 322 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 CDS1Q92903 461 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 TESCQ96BS2 214 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 INTS12Q96CB8 462 aaKnown RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 C14orf79Q96F83 325 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 SH3YL1Q96HL8 342 aaPredicted RBP12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 DUSP26Q9BV47 211 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 PTGES2Q9H7Z7 377 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 VDAC3Q9Y277 283 aa12.34□□□□□ -0.43
VPS9D1-204ENST00000565023 MPDZO75970 2070 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 MBD3L4A6NDZ8 208 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 MBD3L3A6NE82 208 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 MBD3L5A6NJ08 208 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 H0YC42 278 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 NDUFB5O43674 189 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 OXSR1O95747 527 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 IDO1P14902 403 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CPN1P15169 458 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 HPGDP15428 266 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CTSSP25774 331 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CCT3P49368 545 aaKnown RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 ASCL1P50553 236 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CLNS1AP54105 237 aaKnown RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 AQP5P55064 265 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 TPD52P55327 224 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CLDN18P56856 261 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 B3GALT5-AS1P59052 145 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 OR4F3Q6IEY1 312 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 ARSKQ6UWY0 536 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CHMP1BQ7LBR1 199 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 LUZP2Q86TE4 346 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CLECL1Q8IZS7 167 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CLEC4FQ8N1N0 589 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 ACBD4Q8NC06 268 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 OR4C3Q8NH37 302 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 MBD3L2Q8NHZ7 208 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 ZPLD1Q8TCW7 415 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 STON2Q8WXE9 905 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 TEX37Q96LM6 180 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 TREX2Q9BQ50 279 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 EBF4Q9BQW3 602 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CCDC28BQ9BUN5 200 aa12.33□□□□□ -0.44
VPS9D1-204ENST00000565023 CALHM2Q9HA72 323 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 155.6 ms