RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 NFKBIZQ9BYH8 718 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 WDR76Q9H967 626 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 GPN2Q9H9Y4 310 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 EIF3LQ9Y262 564 aaKnown RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 CLASP1Q7Z460 1538 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 INO80Q9ULG1 1556 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ZFYVE16Q7Z3T8 1539 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ABCA9Q8IUA7 1624 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ZSCAN5CA6NGD5 496 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 NDC80O14777 642 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 MAPK13O15264 365 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 JCHAINP01591 159 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ALPIP09923 528 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 CALRP27797 417 aaKnown RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 DLSTP36957 453 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 IL18R1Q13478 541 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 RUNX3Q13761 415 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 C15orf32Q32M92 178 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 LGSNQ5TDP6 509 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ASPHD2Q6ICH7 369 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 CBLN3Q6UW01 205 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 TMEM184AQ6ZMB5 413 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 UNC5CLQ8IV45 518 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 TFB1MQ8WVM0 346 aaKnown RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 DHTKD1Q96HY7 919 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 TSGA13Q96PP4 275 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 COMMD4Q9H0A8 199 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 RBM28Q9NW13 759 aaKnown RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ELOVL2Q9NXB9 296 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 BLOC1S6Q9UL45 172 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 B9D1Q9UPM9 204 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 RNF6Q9Y252 685 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ATP6V0A2Q9Y487 856 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 FANCIQ9NVI1 1328 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 ATP7AQ04656 1500 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 MADDQ8WXG6 1647 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 G3V3Y1 287 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 JAK2O60674 1132 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 ZNF354AO60765 605 aaPredicted RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 ANXA3P12429 323 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 KRT13P13646 458 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 H2AFXP16104 143 aaPredicted RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 OR1D4P47884 311 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 PLOD1Q02809 727 aaPredicted RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 OVGP1Q12889 678 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 SLC1A5Q15758 541 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 CAMK4Q16566 473 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 SCYL2Q6P3W7 929 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 SERINC5Q86VE9 423 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 NAXDQ8IW45 347 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 FADS6Q8N9I5 356 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 OR10T2Q8NGX3 314 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 RHOXF1Q8NHV9 184 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 VN1R17PQ8TDU5 208 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 FOXN4Q96NZ1 517 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 TPPP3Q9BW30 176 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 HCAR1Q9BXC0 346 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 SLC25A51Q9H1U9 297 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 DHX33Q9H6R0 707 aaKnown RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 MEPEQ9NQ76 525 aaPredicted RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 EXOSC3Q9NQT5 275 aaKnown RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 UTP6Q9NYH9 597 aaKnown RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 TMOD2Q9NZR1 351 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 LAMP5Q9UJQ1 280 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 DUSP12Q9UNI6 340 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 METP08581 1390 aa3.62□□□□□ -1.83
LINC00560-201ENST00000564593 ZC3H13Q5T200 1668 aaKnown RBP3.62□□□□□ -1.83
LINC00560-201ENST00000564593 PLCH2O75038 1416 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 IGKV3D-20A0A0C4DH25 116 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 A0A1B0GWJ7 208 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 RAMP1O60894 148 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 CSF2P04141 144 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 LAMP1P11279 417 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 ACVR1BP36896 505 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 ALDH3B2P48448 385 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 PAX2Q02962 417 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 PUDPQ08623 228 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 USH1GQ495M9 461 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 MEDAGQ5VYS4 303 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 FBXL22Q6P050 247 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 LRRC70Q7Z2Q7 622 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 OR5AU1Q8NGC0 362 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 ANKRD9Q96BM1 317 aaPredicted RBP3.61□□□□□ -1.83
LINC00560-201ENST00000564593 ANP32EQ9BTT0 268 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 RIBC2Q9H4K1 309 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 PALMDQ9NP74 551 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.61□□□□□ -1.83
LINC00560-201ENST00000564593 CGNQ9P2M7 1197 aaKnown RBP3.61□□□□□ -1.83
LINC00560-201ENST00000564593 IFT172Q9UG01 1749 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 MYO3AQ8NEV4 1616 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 USP6P35125 1406 aa3.61□□□□□ -1.83
LINC00560-201ENST00000564593 MYOM2P54296 1465 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 FAM74A7A6NL05 159 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 DUX1O43812 170 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 STX11O75558 287 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 IDH1O75874 414 aaKnown RBP3.6□□□□□ -1.83
LINC00560-201ENST00000564593 MFN2O95140 757 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 GJB5O95377 273 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 CHRNA1P02708 482 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms