RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 WFIKKN1Q96NZ8 548 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 MS4A4EQ96PG1 132 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 SDHAF3Q9NRP4 125 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 FBXO34Q9NWN3 711 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 DNAJC15Q9Y5T4 150 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 DSCAMO60469 2012 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 RAI1Q7Z5J4 1906 aaPredicted RBP17.08■□□□□ 0.32
VPS35-202ENST00000561713 INAFM1C9JVW0 142 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 NPIPB8E9PQR5 432 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 PIP5K1BO14986 540 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 CTIFO43310 598 aaKnown RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 OPN1LWP04000 364 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 PDE7AQ13946 482 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 BCL2A1Q16548 175 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 DUSP5Q16690 384 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 CCNJQ5T5M9 372 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 ZNF474Q6S9Z5 364 aaPredicted RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 PRSS57Q6UWY2 283 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 ZNF550Q7Z398 422 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 ZFP28Q8NHY6 868 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 PERPQ96FX8 193 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 C16orf58Q96GQ5 468 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 SH3YL1Q96HL8 342 aaPredicted RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 BDH2Q9BUT1 245 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 C1orf50Q9BV19 199 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 IQCGQ9H095 443 aaKnown RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 PTGES2Q9H7Z7 377 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 UBTD1Q9HAC8 227 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 MID2Q9UJV3 735 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 MRTO4Q9UKD2 239 aaKnown RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 WBP11Q9Y2W2 641 aaKnown RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 ANK3Q12955 4377 aaKnown RBP17.07■□□□□ 0.32
VPS35-202ENST00000561713 HIVEP2P31629 2446 aa17.07■□□□□ 0.32
VPS35-202ENST00000561713 FREM1Q5H8C1 2179 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 MSTNO14793 375 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 TRIM13O60858 407 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 AQP8O94778 261 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 NKX2-2O95096 273 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 OXSR1O95747 527 aaPredicted RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 BCKDHAP12694 445 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 ARRB2P32121 409 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 KIR2DL2P43627 348 aaPredicted RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 SLC6A8P48029 635 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 CLK3P49761 638 aaKnown RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 PSMD4P55036 377 aaKnown RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 MANFP55145 182 aaKnown RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 ACKR1Q16570 336 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 MFSD12Q6NUT3 480 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 GGNQ86UU5 652 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 SLC16A11Q8NCK7 471 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 TRIM44Q96DX7 344 aaPredicted RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 ZBED6CLQ96FA7 236 aaPredicted RBP17.06■□□□□ 0.32
VPS35-202ENST00000561713 PIK3IP1Q96FE7 263 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 PGM2Q96G03 612 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 CCL19Q99731 98 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 PIGQQ9BRB3 760 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 TMEM185BQ9H7F4 350 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 ANKZF1Q9H8Y5 726 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 PPCSQ9HAB8 311 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 C3orf14Q9HBI5 128 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 CLEC4AQ9UMR7 237 aa17.06■□□□□ 0.32
VPS35-202ENST00000561713 ATRQ13535 2644 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 IGLV3-32A0A0A0MS00 114 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 NPIPA5A0A0B4J1W7 369 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 NPIPA7E9PJI5 369 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 EIF1AYO14602 144 aaKnown RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 SKAP2O75563 359 aaPredicted RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 CHEK2O96017 543 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 NPIPA8P0DM63 369 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 MAP3K8P41279 467 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 PRR5P85299 388 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 ARL13AQ5H913 290 aaPredicted RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 OR2A2Q6IF42 318 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 TRABD2AQ86V40 505 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 COX18Q8N8Q8 333 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 BANPQ8N9N5 519 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 EIF1ADQ8N9N8 165 aaKnown RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 CDRT4Q8N9R6 151 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 OR7A2PQ8NGA2 310 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 OR4C3Q8NH37 302 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 HOXB13Q92826 284 aaPredicted RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 CHMP6Q96FZ7 201 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 ZC3HAV1LQ96H79 300 aaKnown RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 ZNF764Q96H86 408 aaPredicted RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 METTL2AQ96IZ6 378 aaKnown RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 L2HGDHQ9H9P8 463 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 RNF122Q9H9V4 155 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 SIRT3Q9NTG7 399 aaPredicted RBP17.05■□□□□ 0.32
VPS35-202ENST00000561713 MKS1Q9NXB0 559 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 ADAM21Q9UKJ8 722 aa17.05■□□□□ 0.32
VPS35-202ENST00000561713 SCAMP2O15127 329 aaKnown RBP17.04■□□□□ 0.32
VPS35-202ENST00000561713 KCNK2O95069 426 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 IFI6P09912 130 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 FPR1P21462 350 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 HPCAL1P37235 193 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 CD79BP40259 229 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 FRKP42685 505 aaPredicted RBP17.04■□□□□ 0.32
VPS35-202ENST00000561713 EIF1AXP47813 144 aaKnown RBP17.04■□□□□ 0.32
VPS35-202ENST00000561713 VSNL1P62760 191 aa17.04■□□□□ 0.32
VPS35-202ENST00000561713 EEF1A1P68104 462 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms