RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CPA3P15088 417 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 SDC1P18827 310 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 GPC1P35052 558 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 EIF1AXP47813 144 aaKnown RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 PCYT1AP49585 367 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 CLK3P49761 638 aaKnown RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 PSMD4P55036 377 aaKnown RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 C17orf67Q0P5P2 114 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 ACKR1Q16570 336 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 SGCBQ16585 318 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 EXOC3L2Q2M3D2 409 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 GLYR1Q49A26 553 aaPredicted RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 Q5PR19 223 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 PPP4R4Q6NUP7 873 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 FIGNL1Q6PIW4 674 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 Q6ZSR9 355 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 SZRD1Q7Z422 152 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 CEP112Q8N8E3 955 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 CCDC63Q8NA47 563 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 HOXB13Q92826 284 aaPredicted RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 GIMAP5Q96F15 307 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 OTUB1Q96FW1 271 aaPredicted RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 TSSK3Q96PN8 268 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 SLC39A3Q9BRY0 314 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 KLHL4Q9C0H6 718 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 TUBB1Q9H4B7 451 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 ZNF395Q9H8N7 513 aaPredicted RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 LRTM1Q9HBL6 345 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 FBXO34Q9NWN3 711 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 OXSMQ9NWU1 459 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 C1orf109Q9NX04 203 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 ZNF226Q9NYT6 803 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 GMPR2Q9P2T1 348 aaKnown RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 BAIAP2L1Q9UHR4 511 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 PROCRQ9UNN8 238 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 WBP11Q9Y2W2 641 aaKnown RBP10.44□□□□□ -0.74
USP3-220ENST00000561381 DSCAMO60469 2012 aa10.44□□□□□ -0.74
USP3-220ENST00000561381 FN1P02751 2386 aaKnown RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 H3BQF6 201 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 EIF1AYO14602 144 aaKnown RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 SMPD2O60906 423 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 NKX2-2O95096 273 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 IFI6P09912 130 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 LINC00032P0C843 101 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 PRPH2P23942 346 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 CRHR1P34998 444 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 RPS3AP61247 264 aaKnown RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 DUSP5Q16690 384 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.43□□□□□ -0.74
USP3-220ENST00000561381 CTU2Q2VPK5 515 aaKnown RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 CCDC153Q494R4 210 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 RFTN2Q52LD8 501 aaPredicted RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 CCNJQ5T5M9 372 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 LIPMQ5VYY2 423 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 CLEC9AQ6UXN8 241 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 FAM214BQ7L5A3 538 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 P3H2Q8IVL5 708 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 C10orf107Q8IVU9 208 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 SLC16A11Q8NCK7 471 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 NUP43Q8NFH3 380 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 OR10D3Q8NH80 312 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 KIF18AQ8NI77 898 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 EPS8L3Q8TE67 593 aaKnown RBP10.43□□□□□ -0.74
USP3-220ENST00000561381 PPCDCQ96CD2 204 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 C16orf58Q96GQ5 468 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 FCRL1Q96LA6 429 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 CCL19Q99731 98 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 PIP5K1AQ99755 562 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 CCT7Q99832 543 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 REEP4Q9H6H4 257 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 TMEM185BQ9H7F4 350 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 C3orf14Q9HBI5 128 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 SH3BP4Q9P0V3 963 aa10.43□□□□□ -0.74
USP3-220ENST00000561381 A0A1W2PRB8 838 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 TTC36A6NLP5 189 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 ALG1L2C9J202 215 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 H7C1Q1 480 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 J3QL48 77 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 SLC28A1O00337 649 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 TNFSF11O14788 317 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 AZIN1O14977 448 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 ARHGEF9O43307 516 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 RGS14O43566 566 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 NDUFB5O43674 189 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 CXCL13O43927 109 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 KCNK2O95069 426 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 LY6G6DO95868 133 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 THBDP07204 575 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 KRT4P19013 534 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 IL11P20809 199 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 TBXA2RP21731 343 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 PSMA4P25789 261 aaKnown RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 FRKP42685 505 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 CCT5P48643 541 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 MANFP55145 182 aaKnown RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 NAA20P61599 178 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 RPL38P63173 70 aaKnown RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 SLC18A2Q05940 514 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 PDE7AQ13946 482 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 PLPPR5Q32ZL2 321 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms