RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RIBC1Q8N443 379 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 ZNF610Q8N9Z0 462 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 CHDHQ8NE62 594 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 FAM110BQ8TC76 370 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 ZNF764Q96H86 408 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 SH3YL1Q96HL8 342 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 PPP3R2Q96LZ3 170 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 MS4A4EQ96PG1 132 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 C1orf50Q9BV19 199 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 TMUB1Q9BVT8 246 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 SIRT3Q9NTG7 399 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 ZCCHC3Q9NUD5 404 aaKnown RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 MKS1Q9NXB0 559 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 KLHL28Q9NXS3 571 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 C6orf203Q9P0P8 240 aaPredicted RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 NTMQ9P121 344 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 ATP6V1HQ9UI12 483 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 ZDHHC2Q9UIJ5 367 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 TMED5Q9Y3A6 229 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 SNX8Q9Y5X2 465 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 AP4B1Q9Y6B7 739 aa9.2□□□□□ -0.94
LDLR-214ENST00000560628 ANKHD1Q8IWZ3 2542 aaKnown RBP9.2□□□□□ -0.94
LDLR-214ENST00000560628 CELSR1Q9NYQ6 3014 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 TMEM114B3SHH9 223 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 ALG1L2C9J202 215 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 EIF1AYO14602 144 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 SCAMP2O15127 329 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 SKAP2O75563 359 aaPredicted RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 ATE1O95260 518 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 HMGN2P05204 90 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 NUDT17P0C025 328 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 HPGDP15428 266 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 TBXA2RP21731 343 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 HPCAL1P37235 193 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CD79BP40259 229 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 EIF1AXP47813 144 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 KCNJ5P48544 419 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 PRIM2P49643 509 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 RPS3AP61247 264 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 PPP2R2AP63151 447 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 LASP1Q14847 261 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 PTGR1Q14914 329 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.19□□□□□ -0.94
LDLR-214ENST00000560628 DEFB113Q30KQ7 82 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 C6orf136Q5SQH8 315 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CPTPQ5TA50 214 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 IL23RQ5VWK5 629 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 ANKRD34AQ69YU3 496 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 LRIG3Q6UXM1 1119 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CAMKMTQ7Z624 323 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 GGNQ86UU5 652 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 KRTCAP2Q8N6L1 136 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 COX18Q8N8Q8 333 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 OR6Y1Q8NGX8 325 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CDS1Q92903 461 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 ZBTB9Q96C00 473 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 MBD6Q96DN6 1003 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 MTERF3Q96E29 417 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 FAM120BQ96EK7 910 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 BTBD2Q9BX70 525 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 PRRG4Q9BZD6 226 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 ROPN1BQ9BZX4 212 aaPredicted RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 RNF122Q9H9V4 155 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 ROPN1Q9HAT0 212 aaPredicted RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 UBQLN4Q9NRR5 601 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 GIN1Q9NXP7 522 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 LGALS13Q9UHV8 139 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 CLEC4AQ9UMR7 237 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 EIF3LQ9Y262 564 aaKnown RBP9.19□□□□□ -0.94
LDLR-214ENST00000560628 ZNF175Q9Y473 711 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 TESMINQ9Y4I5 508 aa9.19□□□□□ -0.94
LDLR-214ENST00000560628 NPIPA5A0A0B4J1W7 369 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 WDR91A4D1P6 747 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 NPIPA7E9PJI5 369 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 SCDO00767 359 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CFLARO15519 480 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CXCL13O43927 109 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 C6orf47O95873 294 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CGAP01215 116 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 BPGMP07738 259 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 NPIPA8P0DM63 369 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 POU2F1P14859 743 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 DDX5P17844 614 aaKnown RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 MAPK1P28482 360 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 SERPINB4P48594 390 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CCT3P49368 545 aaKnown RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 ADAM8P78325 824 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 POU6F2P78424 691 aaPredicted RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 FOXD4Q12950 439 aaPredicted RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 MLC1Q15049 377 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CD226Q15762 336 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 EXOC3L2Q2M3D2 409 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 SPDYE7PQ495Y7 208 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 ATP6AP1LQ52LC2 224 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 XKR7Q5GH72 579 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 ZCCHC12Q6PEW1 402 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 ZNF550Q7Z398 422 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 NUDCD3Q8IVD9 361 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 WDR75Q8IWA0 830 aaKnown RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 METTL25Q8N6Q8 603 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms