RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IFT88Q13099 833 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ITGB3BPQ13352 177 aaPredicted RBP2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ITIH4Q14624 930 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 DCAF4L1Q3SXM0 396 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ARMC3Q5W041 872 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 C11orf88Q6PI97 169 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 PET117Q6UWS5 81 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 IQCF2Q8IXL9 164 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 IQCKQ8N0W5 287 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 SLC35F6Q8N357 371 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 TPRX1Q8N7U7 411 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 MLKLQ8NB16 471 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ULK4Q96C45 1275 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 VMP1Q96GC9 406 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 RUFY1Q96T51 708 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 SPAG8Q99932 426 aaPredicted RBP2.52□□□□□ -2.01
VPS13C-208ENST00000559119 RHOXF2Q9BQY4 288 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 DPH7Q9BTV6 452 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 CENPHQ9H3R5 247 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 HAUS4Q9H6D7 363 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 TECRQ9NZ01 308 aaKnown RBP2.52□□□□□ -2.01
VPS13C-208ENST00000559119 HMG20BQ9P0W2 317 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 RNF14Q9UBS8 474 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 TUBGCP4Q9UGJ1 667 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 EMCNQ9ULC0 261 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 PAIP2BQ9ULR5 123 aaKnown RBP2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ADGRB1O14514 1584 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 TCHHQ07283 1943 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 ABCC6O95255 1503 aa2.52□□□□□ -2.01
VPS13C-208ENST00000559119 SETD1AO15047 1707 aaKnown RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SPHKAPQ2M3C7 1700 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ABCC12Q96J65 1359 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 JCADQ9P266 1359 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RAPGEF6Q8TEU7 1601 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 A0A1B0GVL5 298 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TMEM110-MUSTN1A8MSY1 372 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 WWP2O00308 870 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ATP6V1G1O75348 118 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TROVE2P10155 538 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 NQO1P15559 274 aaKnown RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 CALB2P22676 271 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 CMA1P23946 247 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 IGFBP5P24593 272 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RBMXP38159 391 aaKnown RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 OR1D4P47884 311 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ALDH3B2P48448 385 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ACADVLP49748 655 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SERPINB8P50452 374 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RBP5P82980 135 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TFCP2Q12800 502 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 BFSP1Q12934 665 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 CBX3Q13185 183 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 BTG3Q14201 252 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 HEPACAMQ14CZ8 416 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 KARSQ15046 597 aaKnown RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SBK1Q52WX2 424 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ANKRD20A2Q5SQ80 823 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ANKRD20A1Q5TYW2 823 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ANKRD20A3Q5VUR7 823 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 OR52E8Q6IFG1 317 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 OLFM4Q6UX06 510 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 C3orf62Q6ZUJ4 267 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 OTUD6AQ7L8S5 288 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 GALNTL5Q7Z4T8 443 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TMEM110Q86TL2 294 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 METTL23Q86XA0 190 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RELL2Q8NC24 303 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 LINC00301Q8NCQ3 95 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RFESDQ8TAC1 157 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SETD6Q8TBK2 473 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 KIFAP3Q92845 792 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 DHTKD1Q96HY7 919 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ATP6V1G3Q96LB4 118 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TIPINQ9BVW5 301 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 OPN3Q9H1Y3 402 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 Q9H3A6 140 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TMBIM4Q9HC24 238 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ESM1Q9NQ30 184 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 RMND1Q9NWS8 449 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 QPCTLQ9NXS2 382 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 NDUFA13Q9P0J0 144 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SLC2A6Q9UGQ3 507 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 L3MBTL1Q9Y468 752 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SAR1BQ9Y6B6 198 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 COMMD3-BMI1R4GMX3 469 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 SETBP1Q9Y6X0 1596 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TRPM2O94759 1503 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 TOPBP1Q92547 1522 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 LRRC7Q96NW7 1537 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 MYO10Q9HD67 2058 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 MRC2Q9UBG0 1479 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 CRYBG1Q9Y4K1 1723 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 BCL9O00512 1426 aa2.51□□□□□ -2.01
VPS13C-208ENST00000559119 PRG4Q92954 1404 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-208ENST00000559119 ZMYM6O95789 1325 aa2.5□□□□□ -2.01
VPS13C-208ENST00000559119 MROH7Q68CQ1 1323 aa2.5□□□□□ -2.01
VPS13C-208ENST00000559119 A0A087X0K7 114 aa2.5□□□□□ -2.01
VPS13C-208ENST00000559119 A0A0U1RQK1 487 aa2.5□□□□□ -2.01
VPS13C-208ENST00000559119 ZNF233A6NK53 670 aa2.5□□□□□ -2.01
VPS13C-208ENST00000559119 H3BQV1 296 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms