RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RALYQ9UKM9 306 aaKnown RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 KLF13Q9Y2Y9 288 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 PCDHGB6Q9Y5F9 930 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 A0A0G2JPF8 293 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HNRNPCL2B2RXH8 293 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HNRNPCL3B7ZW38 293 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 ALG1L2C9J202 215 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 C5orf58C9J3I9 102 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HNRNPCL1O60812 293 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 SORBS2O94875 1100 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 ANGPTL1O95841 491 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 RFPL3SP0C7P2 107 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HNRNPCL4P0DMR1 293 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 RPS4Y1P22090 263 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 MSX2P35548 267 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 CRYBA2P53672 197 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 PCBP3P57721 371 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 KCNJ2P63252 427 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 RPP38P78345 283 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HPCAP84074 193 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 RBBP4Q09028 425 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 KLRB1Q12918 225 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 CEACAM7Q14002 265 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 PRR30Q53SZ7 412 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 SLC30A6Q6NXT4 461 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 VRK2Q86Y07 508 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 MICU2Q8IYU8 434 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 WDSUB1Q8N9V3 476 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 TMEM178AQ8NBL3 297 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HIPK4Q8NE63 616 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 OR2T12Q8NG77 320 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 DUSP19Q8WTR2 217 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 ARSGQ96EG1 525 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 JSRP1Q96MG2 331 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 FRMD6Q96NE9 622 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 FAM173AQ9BQD7 235 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 DOHHQ9BU89 302 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 SPATA9Q9BWV2 254 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 TBL1XR1Q9BZK7 514 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 HOXD1Q9GZZ0 328 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 ALG2Q9H553 416 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 CD300AQ9UGN4 299 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 ABCG2Q9UNQ0 655 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 NTNG1Q9Y2I2 539 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 CHST2Q9Y4C5 530 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 DTNAQ9Y4J8 743 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 WIF1Q9Y5W5 379 aa11.71□□□□□ -0.53
SHMT2-227ENST00000557269 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.71□□□□□ -0.53
SHMT2-227ENST00000557269 CNTRLQ7Z7A1 2325 aa11.71□□□□□ -0.54
SHMT2-227ENST00000557269 BOD1L1Q8NFC6 3051 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 ELOVL7A1L3X0 281 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 TMEM247A6NEH6 219 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 SERINC4A6NH21 518 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 KLRC4-KLRK1H3BQV0 150 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 SCDO00767 359 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 GNB5O14775 395 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 GMFGO60234 142 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 SNX4O95219 450 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 TCN1P20061 433 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 NFATC3Q12968 1075 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 SNTA1Q13424 505 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 GNA13Q14344 377 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 TBCELQ5QJ74 424 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 PRAMEF8Q5VWM4 474 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 PRAMEF7Q5VXH5 474 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 RPUSD3Q6P087 351 aaKnown RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 BNC2Q6ZN30 1099 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 COMTD1Q86VU5 262 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 METTL25Q8N6Q8 603 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF614Q8N883 585 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 ZFP62Q8NB50 900 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 OR52P1PQ8NH57 321 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 BBS10Q8TAM1 723 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 TMEM41AQ96HV5 264 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 CLPTM1LQ96KA5 538 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 GNRHR2Q96P88 292 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 KCTD14Q9BQ13 255 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 C1orf21Q9H246 121 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 NDE1Q9NXR1 346 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 CALML5Q9NZT1 146 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 SUCOQ9UBS9 1254 aaKnown RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 FBXL2Q9UKC9 423 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 ANGPT4Q9Y264 503 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 AP3M1Q9Y2T2 418 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 GPC6Q9Y625 555 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-227ENST00000557269 ATRXP46100 2492 aa11.7□□□□□ -0.54
SHMT2-227ENST00000557269 A0A1W2PQD3 144 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 FAM166BA8MTA8 275 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 M0QX08 132 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 EBAG9O00559 213 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 SNPHO15079 494 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 GYG2O15488 501 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 NDUFB5O43674 189 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 TPST1O60507 370 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 PDE5AO76074 875 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 GLSO94925 669 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 MFN2O95140 757 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 RASAL1O95294 804 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 EPPINO95925 133 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 OPN1SWP03999 348 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms