RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 BCL2A1Q16548 175 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CT45A2Q5DJT8 189 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 TTC19Q6DKK2 380 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PODNL1Q6PEZ8 512 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 FAM111BQ6SJ93 734 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PLCZ1Q86YW0 608 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PRR22Q8IZ63 422 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 SAMD14Q8IZD0 417 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 OR4F6Q8NGB9 312 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 RDH11Q8TC12 318 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 ZNF483Q8TF39 744 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 JADE3Q92613 823 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PHF21BQ96EK2 531 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 C11orf24Q96F05 449 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 FAM111AQ96PZ2 611 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 MRPL57Q9BQC6 102 aaKnown RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 MED18Q9BUE0 208 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CDADC1Q9BWV3 514 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 TSPYL1Q9H0U9 437 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 MRPL46Q9H2W6 279 aaKnown RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PPCSQ9HAB8 311 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 NMRK1Q9NWW6 199 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 XPR1Q9UBH6 696 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 SNX6Q9UNH7 406 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 DLGAP4Q9Y2H0 992 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PLLPQ9Y342 182 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 ANK2Q01484 3957 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 A8MXE2 369 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 H0Y3Z8 333 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TSPAN2O60636 221 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 SMIM24O75264 130 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TNFSF13O75888 250 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 PDYNP01213 254 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 IFNA2P01563 188 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 SBK3P0C264 359 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 ZNF708P17019 499 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 CNTFP26441 200 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 CCKARP32238 428 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 DEKP35659 375 aaKnown RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 FEN1P39748 380 aaKnown RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 STARP49675 285 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 SERPINB9P50453 376 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 GAS1P54826 345 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 ATP5J2P56134 94 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 CLDN18P56856 261 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 DUSP2Q05923 314 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 EXOSC7Q15024 291 aaKnown RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 KRTAP24-1Q3LI83 254 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TRMT12Q53H54 448 aaKnown RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 ZNF628Q5EBL2 1059 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 GALNT18Q6P9A2 607 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 AAGABQ6PD74 315 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 FRMD7Q6ZUT3 714 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 MILR1Q7Z6M3 343 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 IFNEQ86WN2 208 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 OR52R1Q8NGF1 315 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TMCO6Q96DC7 493 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 VSTM2LQ96N03 204 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 COL21A1Q96P44 957 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 FAIM2Q9BWQ8 316 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 OPN3Q9H1Y3 402 aaPredicted RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 VPS11Q9H270 941 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 ZMAT4Q9H898 229 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 GALNT9Q9HCQ5 603 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 SERHLQ9NQF3 203 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 FARSBQ9NSD9 589 aaKnown RBP9.02□□□□□ -0.97
SCFD1-220ENST00000556486 TAS2R10Q9NYW0 307 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 NINJ2Q9NZG7 142 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 EHD3Q9NZN3 535 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 KLRF1Q9NZS2 232 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 VPS29Q9UBQ0 182 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 BCAP29Q9UHQ4 241 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 ZNF225Q9UK10 706 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 PACSIN3Q9UKS6 424 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 SLC12A4Q9UP95 1085 aa9.02□□□□□ -0.97
SCFD1-220ENST00000556486 A8MT66 165 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 PLOD2O00469 737 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 ZIC3O60481 467 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 NPHS1O60500 1241 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 PLOD3O60568 738 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 ERAL1O75616 437 aaKnown RBP9.01□□□□□ -0.97
SCFD1-220ENST00000556486 PLAUP00749 431 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 INHBAP08476 426 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 LOXP28300 417 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-220ENST00000556486 ARL1P40616 181 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-220ENST00000556486 GSTM5P46439 218 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 PNLIPRP2P54317 469 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 CSTF3Q12996 717 aaKnown RBP9.01□□□□□ -0.97
SCFD1-220ENST00000556486 EFR3AQ14156 821 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 NNATQ16517 81 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 CLEC12BQ2HXU8 276 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 HEPHL1Q6MZM0 1159 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 VWA1Q6PCB0 445 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 PLEKHM3Q6ZWE6 761 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 LCA5Q86VQ0 697 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 C1orf52Q8N6N3 182 aaKnown RBP9.01□□□□□ -0.97
SCFD1-220ENST00000556486 CNEP1R1Q8N9A8 125 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 OR14L1PQ8NHC6 308 aa9.01□□□□□ -0.97
SCFD1-220ENST00000556486 SELENOMQ8WWX9 145 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms