RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KLHL26Q53HC5 615 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 SAMD4BQ5PRF9 694 aaKnown RBP11.2□□□□□ -0.62
SHMT2-209ENST00000553949 PDZK1Q5T2W1 519 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-209ENST00000553949 HMGN2P46Q86SG4 172 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 MARCH3Q86UD3 253 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 SLC30A8Q8IWU4 369 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 MICU2Q8IYU8 434 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 RNF148Q8N7C7 305 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 TEX19Q8NA77 164 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 OIT3Q8WWZ8 545 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 SLC7A6OSQ96CW6 309 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-209ENST00000553949 KCTD14Q9BQ13 255 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-209ENST00000553949 FAM173AQ9BQD7 235 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 BTBD10Q9BSF8 475 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 RTN4RQ9BZR6 473 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 LUZP4Q9P127 313 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 SUCOQ9UBS9 1254 aaKnown RBP11.2□□□□□ -0.62
SHMT2-209ENST00000553949 PACSIN3Q9UKS6 424 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 DTNAQ9Y4J8 743 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 BOD1L1Q8NFC6 3051 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 CACNA1BQ00975 2339 aa11.2□□□□□ -0.62
SHMT2-209ENST00000553949 A0A1W2PQD3 144 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 C2orf72A6NCS6 295 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 SERINC4A6NH21 518 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 NDUFB5O43674 189 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 TRIM3O75382 744 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 ANGPTL1O95841 491 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 DBIP07108 87 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 HSD17B1P14061 328 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 ETS2P15036 469 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 RPS4Y1P22090 263 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 MEOX1P50221 254 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 RASSF2P50749 326 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 RNF144AP50876 292 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 PCBP3P57721 371 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 VEZF1Q14119 521 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 SPATS1Q496A3 300 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 DNAL1Q4LDG9 190 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 INTS11Q5TA45 600 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 RPUSD3Q6P087 351 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 CCDC121Q6ZUS5 278 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 PTRH1Q86Y79 214 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 PEX5LQ8IYB4 626 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF614Q8N883 585 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 Q8NA96 180 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 GATSQ8NAP1 163 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 LSM14AQ8ND56 463 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 TNIP2Q8NFZ5 429 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 OR2M7Q8NG81 312 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 OR52P1PQ8NH57 321 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 TMEM41AQ96HV5 264 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 JSRP1Q96MG2 331 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 FRMD6Q96NE9 622 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 TUBA8Q9NY65 449 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 CD300AQ9UGN4 299 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 PRPF19Q9UMS4 504 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 WIF1Q9Y5W5 379 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 TNRC6AQ8NDV7 1962 aaKnown RBP11.19□□□□□ -0.62
SHMT2-209ENST00000553949 NBEAQ8NFP9 2946 aa11.19□□□□□ -0.62
SHMT2-209ENST00000553949 C17orf51A8MQB3 221 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 H3BNH8 94 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 GCM2O75603 506 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 SERPINB7O75635 380 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 PDE9AO76083 593 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 RASAL1O95294 804 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 THBS1P07996 1170 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ENDOUP21128 410 aaKnown RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 MASP1P48740 699 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 C17orf67Q0P5P2 114 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 FOXO1Q12778 655 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 CEACAM7Q14002 265 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 FGFBP1Q14512 234 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 INPP5JQ15735 1006 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 CD226Q15762 336 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 INAQ16352 499 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 COLEC12Q5KU26 742 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 FNDC7Q5VTL7 733 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 TIGD3Q6B0B8 471 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 CCDC80Q76M96 950 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 PATL1Q86TB9 770 aaKnown RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 KRT73Q86Y46 540 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 MISPQ8IVT2 679 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ARHGAP24Q8N264 748 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 WDSUB1Q8N9V3 476 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ZFP62Q8NB50 900 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 FAM98AQ8NCA5 519 aaKnown RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 FAM156AQ8NDB6 213 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 PHOSPHO1Q8TCT1 267 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 DUSP19Q8WTR2 217 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 WDR60Q8WVS4 1066 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF597Q96LX8 424 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF607Q96SK3 696 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 CACYBPQ9HB71 228 aaKnown RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ZFP64Q9NPA5 681 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 SDHAF3Q9NRP4 125 aa11.18□□□□□ -0.62
SHMT2-209ENST00000553949 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-209ENST00000553949 PPP4R1LQ9P1A2 415 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms