RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 WDR88Q6ZMY6 472 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 RHOXF1Q8NHV9 184 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 PTPMT1Q8WUK0 201 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 CNOT9Q92600 299 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 NDC1Q9BTX1 674 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 IMPAD1Q9NX62 359 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 KLHL28Q9NXS3 571 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GPR83Q9NYM4 423 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 FLRT3Q9NZU0 649 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 CTSFQ9UBX1 484 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GMEB2Q9UKD1 530 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 SATB2Q9UPW6 733 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 MGAT4BQ9UQ53 548 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 AP3D1O14617 1153 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 OXSR1O95747 527 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 FUT1P19526 365 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GPR4P46093 362 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GCGRP47871 477 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 HSD17B7P56937 341 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 DESI1Q6ICB0 168 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 TCEAL6Q6IPX3 200 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 BORAQ6PGQ7 559 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF730Q6ZMV8 503 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 PRSS42Q7Z5A4 293 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 P3H2Q8IVL5 708 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 ATOH1Q92858 354 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 TCEAL3Q969E4 200 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 C12orf43Q96C57 262 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 SLC41A3Q96GZ6 507 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GTPBP2Q9BX10 602 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 SAP130Q9H0E3 1048 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 DUSP21Q9H596 190 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF768Q9H5H4 540 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF304Q9HCX3 659 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 TAS2R16Q9NYV7 291 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 IL20RAQ9UHF4 553 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 IFT52Q9Y366 437 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 PCNX3Q9H6A9 2034 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 TTC28Q96AY4 2481 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 NID1P14543 1247 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GP2P55259 537 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 TRIM61Q5EBN2 209 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GTF2IRD2BQ6EKJ0 949 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 NANOGNBQ7Z5D8 188 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 GTF2IRD2Q86UP8 949 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF615Q8N8J6 731 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 OR13F1Q8NGS4 319 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 FAR1Q8WVX9 515 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 LMF2Q9BU23 707 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 OR8D2Q9GZM6 311 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 SNX5Q9Y5X3 404 aa11.8□□□□□ -0.52
VIPAS39-206ENST00000553888 CDHR4A6H8M9 788 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SYNDIG1LA6NDD5 238 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DBIP07108 87 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 FBLP22087 321 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 MLLT10P55197 1068 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SMIM11AP58511 58 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 ALDH6A1Q02252 535 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DBPQ10586 325 aaPredicted RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 ARHGAP40Q5TG30 622 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 TMEM71Q6P5X7 295 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 ZCCHC12Q6PEW1 402 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 HOXB13Q92826 284 aaPredicted RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 EFHD2Q96C19 240 aaPredicted RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SENP5Q96HI0 755 aaPredicted RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 OR6C1Q96RD1 312 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DCUN1D5Q9BTE7 237 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 NRSN2Q9GZP1 204 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SCN3BQ9NY72 215 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SEMA5BQ9P283 1151 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SUSD2Q9UGT4 822 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 KPNA4O00629 521 aaPredicted RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 PRAMEF2O60811 474 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SLITRK5O94991 958 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 ATE1O95260 518 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 FUT7Q11130 342 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 TRAM2Q15035 370 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 LANCL3Q6ZV70 420 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 PTCHD4Q6ZW05 846 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 NRMQ8IXM6 262 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 ZSCAN1Q8NBB4 408 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 OR8D4Q8NGM9 314 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 GRHL3Q8TE85 626 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 GGHQ92820 318 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SLC38A4Q969I6 547 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DUSP23Q9BVJ7 150 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 CACYBPQ9HB71 228 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 APMAPQ9HDC9 416 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SLC22A11Q9NSA0 550 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DCAF16Q9NXF7 216 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 DNAJC27Q9NZQ0 273 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 SERTAD3Q9UJW9 196 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 TPRKBQ9Y3C4 175 aa11.79□□□□□ -0.52
VIPAS39-206ENST00000553888 A0A0B4J203 849 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 IGHV5-10-1A0A0J9YXX1 117 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 CDC14CA4D256 554 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 LCKP06239 509 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 THBS1P07996 1170 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 ST3GAL3Q11203 375 aa11.78□□□□□ -0.52
VIPAS39-206ENST00000553888 ILKQ13418 452 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms