RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZDBF2Q9HCK1 2354 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 MUC6Q6W4X9 2439 aa24.39■■□□□ 1.5
CCDC88C-205ENST00000553403 A8MU76 341 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 CCNA2P20248 432 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 FPR3P25089 353 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 GIPRP48546 466 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 PGDP52209 483 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 PSMD4P55036 377 aaKnown RBP24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 NHLH1Q02575 133 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 GRAMD2AQ8IUY3 354 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 STX19Q8N4C7 294 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 C16orf52Q8NHV5 167 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF501Q96CX3 271 aaPredicted RBP24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 YIPF2Q9BWQ6 316 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 POLDIP3Q9BY77 421 aaKnown RBP24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 AMBNQ9NP70 447 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 ENPP5Q9UJA9 477 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC7A7Q9UM01 511 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 DTX4Q9Y2E6 619 aa24.39■■□□□ 1.49
CCDC88C-205ENST00000553403 IGKV1D-16P01601 117 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 CLPSP04118 112 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 PIPP12273 146 aaPredicted RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 ST13P50502 369 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 SMSP52788 366 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 CSTF1Q05048 431 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 DYNC1I2Q13409 638 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 GINS1Q14691 196 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 OR1Q1Q15612 314 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF141Q15928 474 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 OCLNQ16625 522 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 HLA-BQ31612 363 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC25A30Q5SVS4 291 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 PEAR1Q5VY43 1037 aaPredicted RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 ZC3H14Q6PJT7 736 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 KIF18BQ86Y91 864 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 PIGKQ92643 395 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC35B4Q969S0 331 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 YIPF6Q96EC8 236 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF559Q9BR84 538 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 ST6GALNAC1Q9NSC7 600 aaPredicted RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 GPR83Q9NYM4 423 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 DHCR7Q9UBM7 475 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 KMT2EQ8IZD2 1858 aa24.38■■□□□ 1.49
CCDC88C-205ENST00000553403 IGKV3D-11A0A0A0MRZ8 115 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 KLF4O43474 513 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 GKN3PP0CG01 181 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 CT45A8P0DMV1 189 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 CT45A9P0DMV2 189 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 PRG2P13727 222 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 FBLP22087 321 aaKnown RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 HTR2AP28223 471 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC15A1P46059 708 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 CT45A2Q5DJT8 189 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 TMEM105Q8N8V8 129 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 FAM181AQ8N9Y4 354 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 RCBTB1Q8NDN9 531 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 B3GNT7Q8NFL0 401 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 OR4N2Q8NGD1 307 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 C9orf43Q8TAL5 461 aaPredicted RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 TEX47Q8TBZ9 253 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 ZDHHC19Q8WVZ1 309 aaPredicted RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF304Q9HCX3 659 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 LY6G6EA0A0G2JKS1 128 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 C17orf105B2RV13 164 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 PSMB9P28065 219 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 ST3GAL4Q11206 333 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 IRF3Q14653 427 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 PDZK1Q5T2W1 519 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 MRGPREQ86SM8 312 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 MAML2Q8IZL2 1156 aaPredicted RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 RNF113BQ8IZP6 322 aaKnown RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 FAM26EQ8N5C1 309 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 FAM46AQ96IP4 442 aaKnown RBP24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 IL4I1Q96RQ9 567 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 PRSS27Q9BQR3 290 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 TIMMDC1Q9NPL8 285 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 FGF21Q9NSA1 209 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 CBLCQ9ULV8 474 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 U3KQA8 63 aa24.37■■□□□ 1.49
CCDC88C-205ENST00000553403 SPTBP11277 2137 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 A0A1B0GX78 115 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 NPIPB9F8W1W9 429 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 ENTPD6O75354 484 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 LYPD3O95274 346 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 STSP08842 583 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 ANKRD34CP0C6C1 535 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 C21orf33P30042 268 aaPredicted RBP24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 PCYT1AP49585 367 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF613Q6PF04 617 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC16A12Q6ZSM3 486 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 PTPMT1Q8WUK0 201 aaPredicted RBP24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 TMEM255BQ8WV15 326 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 CRELD1Q96HD1 420 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 ITPAQ9BY32 194 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 TVP23BQ9NYZ1 205 aa24.36■■□□□ 1.49
CCDC88C-205ENST00000553403 WDFY4Q6ZS81 3184 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 GALR2O43603 387 aaPredicted RBP24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 DYRK3O43781 588 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 RFX3P48380 749 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 ATP12AP54707 1039 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms