RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 KLHL31Q9H511 634 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 LRTM1Q9HBL6 345 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CCDC177Q9NQR7 707 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 HPF1Q9NWY4 346 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 QPCTLQ9NXS2 382 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 FBXW2Q9UKT8 454 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 GTF2A1LQ9UNN4 478 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ERVK-11Q9UQG0 969 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 PDE10AQ9Y233 779 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 DRG1Q9Y295 367 aaKnown RBP3.22□□□□□ -1.89
LIMA1-206ENST00000550611 CRYL1Q9Y2S2 319 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 GPR52Q9Y2T5 361 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 DTNAQ9Y4J8 743 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 ATG4BQ9Y4P1 393 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 IKBKGQ9Y6K9 419 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 HYDINQ4G0P3 5121 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 WNK1Q9H4A3 2382 aa3.22□□□□□ -1.89
LIMA1-206ENST00000550611 SCN2AQ99250 2005 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SYNDIG1LA6NDD5 238 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 GOLGA6L9A6NEM1 432 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 AKR1B15C9JRZ8 316 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 GOLGA8KD6RF30 607 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 GOLGA8TH3BQL2 631 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 AP3B1O00203 1094 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 EIF3FO00303 357 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 WWP2O00308 870 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CLDN4O14493 209 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NDUFS4O43181 175 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 OR1F1O43749 312 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SMPD2O60906 423 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CTNSO60931 367 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ACTL6BO94805 426 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SOX30O94993 753 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SYF2O95926 243 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 TBX6O95947 436 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 APRTP07741 180 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SERPINA6P08185 405 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ITGA5P08648 1049 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ZSCAN5DPP0CG00 497 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CCL3P10147 92 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CDH1P12830 882 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 OGNP20774 298 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 LOXP28300 417 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RPL22P35268 128 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 OPRM1P35372 400 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 AHRP35869 848 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 PIGAP37287 484 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CETN2P41208 172 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 DNASE1L1P49184 302 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 PCYT1AP49585 367 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CCR8P51685 355 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 HNRNPFP52597 415 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 HSD17B7P56937 341 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RAB8AP61006 207 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 TBPL1P62380 186 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 TPM4P67936 248 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CRYZQ08257 329 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NAE1Q13564 534 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CUL1Q13616 776 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ACKR1Q16570 336 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 TTLL9Q3SXZ7 439 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NHSL2Q5HYW2 709 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ATPAF1Q5TC12 328 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ARMC3Q5W041 872 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 KIAA0930Q6ICG6 404 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 UGT3A1Q6NUS8 523 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NEPROQ6NW34 567 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 OPN5Q6U736 354 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CES3Q6UWW8 571 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 HSDL2Q6YN16 418 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RTL4Q6ZR62 310 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RINLQ6ZS11 566 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ABHD13Q7L211 337 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 LACC1Q8IV20 430 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF595Q8IYB9 648 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CCDC170Q8IYT3 715 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RASGEF1CQ8N431 466 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF321PQ8N8H1 164 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 TC2NQ8N9U0 490 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 MORN4Q8NDC4 146 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 MBD3L2Q8NHZ7 208 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CD200R1Q8TD46 325 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 PIGTQ969N2 578 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 C3orf49Q96BT1 292 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SNF8Q96H20 258 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CAPZA3Q96KX2 299 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 QRFPRQ96P65 431 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SIGLEC11Q96RL6 698 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 HAUS8Q9BT25 410 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 THAP7Q9BT49 309 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NPLQ9BXD5 320 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 FRMD8P1Q9BZ68 369 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ATG10Q9H0Y0 220 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 CALHM2Q9HA72 323 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 PARVBQ9HBI1 364 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SEPSECSQ9HD40 501 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ADAP2Q9NPF8 381 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 EIF2B3Q9NR50 452 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 YAE1D1Q9NRH1 226 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 PNO1Q9NRX1 252 aaKnown RBP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms