RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CCKARP32238 428 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 EEFSECP57772 596 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 LTBQ06643 244 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 PON3Q15166 354 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 TMEM44Q2T9K0 475 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 GRAMD1BQ3KR37 738 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 SHEQ5VZ18 495 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 ANKRD26P1Q6NSI1 321 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 FRMD7Q6ZUT3 714 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 ZNF551Q7Z340 670 aaPredicted RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 ZNF550Q7Z398 422 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 BIVMQ86UB2 503 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 EXOC3L1Q86VI1 746 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 IFT20Q8IY31 132 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 FAM76AQ8TAV0 307 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 FNDC9Q8TBE3 224 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 PIK3R3Q92569 461 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 GFM2Q969S9 779 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 CCDC126Q96EE4 140 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 C1GALT1C1Q96EU7 318 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 PIK3IP1Q96FE7 263 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 MARK4Q96L34 752 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 C12orf65Q9H3J6 166 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 PTGES2Q9H7Z7 377 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 RNF122Q9H9V4 155 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 Q9N2J8 555 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 FAM120CQ9NX05 1096 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 ELOVL5Q9NYP7 299 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 GMPR2Q9P2T1 348 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 ABCG2Q9UNQ0 655 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 WBP11Q9Y2W2 641 aaKnown RBP7.61□□□□□ -1.19
USP28-215ENST00000545608 ZNF175Q9Y473 711 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 PTGDR2Q9Y5Y4 395 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 NF1P21359 2839 aa7.61□□□□□ -1.19
USP28-215ENST00000545608 IGLV3-32A0A0A0MS00 114 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 C16orf97H3BN30 126 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 LINC01387J3KSC0 135 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 PLIN3O60664 434 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GLRA3O75311 464 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 SEC22BO75396 215 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 CRCPO75575 148 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 RSL1D1O76021 490 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 AQP8O94778 261 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 ANGPTL1O95841 491 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 CD8BP10966 210 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 PRPS2P11908 318 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 LOXP28300 417 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 ADSLP30566 484 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 UGT2B10P36537 528 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 MAP3K8P41279 467 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 SLC6A8P48029 635 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 KCNJ5P48544 419 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 CLK3P49761 638 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 PSMD4P55036 377 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 DNAJB13P59910 316 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 RPS26P62854 115 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 PRR5P85299 388 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 C17orf67Q0P5P2 114 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 HSPB3Q12988 150 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GANABQ14697 944 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 GUSBP1Q15486 140 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 ZNHIT3Q15649 155 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 ACKR1Q16570 336 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GLYR1Q49A26 553 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 ZNF385BQ569K4 471 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 ANKRD34AQ69YU3 496 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 CLEC6AQ6EIG7 209 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 Q6ZSR9 355 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GALNT10Q86SR1 603 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GGNQ86UU5 652 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GSPT2Q8IYD1 628 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 METTL25Q8N6Q8 603 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 OR4C3Q8NH37 302 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 HOXB13Q92826 284 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 CIDECQ96AQ7 238 aaPredicted RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 ZC3HAV1LQ96H79 300 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 RHOVQ96L33 236 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 NPAS1Q99742 590 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 KLHDC3Q9BQ90 382 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 RHOXF2Q9BQY4 288 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 PIGQQ9BRB3 760 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 SLC39A3Q9BRY0 314 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 MED18Q9BUE0 208 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 TBL1XR1Q9BZK7 514 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 C3orf14Q9HBI5 128 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 EQTNQ9NQ60 294 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 ZNF226Q9NYT6 803 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 MRTO4Q9UKD2 239 aaKnown RBP7.6□□□□□ -1.19
USP28-215ENST00000545608 PROCRQ9UNN8 238 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 AP4B1Q9Y6B7 739 aa7.6□□□□□ -1.19
USP28-215ENST00000545608 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 TTC36A6NLP5 189 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 ALG1L2C9J202 215 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 NPIPB8E9PQR5 432 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 H3BQF6 201 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 SLC28A1O00337 649 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 ARHGEF9O43307 516 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 AKAP10O43572 662 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 SMPD2O60906 423 aa7.59□□□□□ -1.19
USP28-215ENST00000545608 NKX2-2O95096 273 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms