RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 KCTD11Q693B1 232 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 CFAP161Q6P656 301 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 THOC6Q86W42 341 aaKnown RBP8.87□□□□□ -0.99
CLIP1-214ENST00000540539 SLITRK4Q8IW52 837 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 CCNYQ8ND76 341 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 OR56A4Q8NGH8 313 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 OR2G2Q8NGZ5 317 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 PPTC7Q8NI37 304 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 POP5Q969H6 163 aaKnown RBP8.87□□□□□ -0.99
CLIP1-214ENST00000540539 MAPKAP1Q9BPZ7 522 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 NDUFAF3Q9BU61 184 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 SEC11CQ9BY50 192 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 ZDHHC5Q9C0B5 715 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 CACYBPQ9HB71 228 aaKnown RBP8.87□□□□□ -0.99
CLIP1-214ENST00000540539 CYSLTR2Q9NS75 346 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 ASF1BQ9NVP2 202 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 CLN6Q9NWW5 311 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 KLHL8Q9P2G9 620 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-214ENST00000540539 SH3BGRL2Q9UJC5 107 aa8.87□□□□□ -0.99
CLIP1-214ENST00000540539 TMEM184BQ9Y519 407 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-214ENST00000540539 IGKV6D-21A0A0A0MT36 114 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 A6NJY4 79 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 A6NLC8 198 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SEPT4O43236 478 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ENTPD6O75354 484 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 INHAP05111 366 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 CD3GP09693 182 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 UBBP0CG47 229 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 UBCP0CG48 685 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 MYOGP15173 224 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 IDSP22304 550 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 HTR2AP28223 471 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ADH6P28332 368 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PRDX3P30048 256 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 CCND3P30281 292 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 NOS2P35228 1153 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PMELP40967 661 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LBX1P52954 281 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 OR2B8PP59922 312 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PSMA6P60900 246 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 RAP1AP62834 184 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 RPS27AP62979 156 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 UBA52P62987 128 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 FABP5Q01469 135 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LCP2Q13094 533 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SLBPQ14493 270 aaKnown RBP eCLIP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 KIAA0040Q15053 153 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 KCNMB1Q16558 191 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PLK5Q496M5 336 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF789Q5FWF6 425 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ARSIQ5FYB1 569 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 RNASE12Q5GAN4 147 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LIN54Q6MZP7 749 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TRIM46Q7Z4K8 759 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TECPR1Q7Z6L1 1165 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 KLHDC8BQ8IXV7 354 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LAS2Q8IYD9 372 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TOMM5Q8N4H5 51 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF321PQ8N8H1 164 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 FAM46DQ8NEK8 389 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PROKR2Q8NFJ6 384 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 FCRL5Q96RD9 977 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ABHD1Q96SE0 405 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 EPYCQ99645 322 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 C11orf84Q9BUA3 381 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 NIF3L1Q9GZT8 377 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 EPHX3Q9H6B9 360 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SLC25A19Q9HC21 320 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ACKR4Q9NPB9 350 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SEMA4BQ9NPR2 832 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF302Q9NR11 478 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 NANSQ9NR45 359 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 HEBP1Q9NRV9 189 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 GAR1Q9NY12 217 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 STOX2Q9P2F5 926 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SNX11Q9Y5W9 270 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SPIN1Q9Y657 262 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TRIP11Q15643 1979 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 FAM86C2PA6NEL3 165 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 A8MWP6 167 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 B4E171 279 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 DUSP11O75319 330 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SLC25A12O75746 678 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 PTBP3O95758 552 aaKnown RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 EPXP11678 715 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 CDX1P47902 265 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 EGR3Q06889 387 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 GAGE1Q13065 139 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 SLC14A2Q15849 920 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 COL13A1Q5TAT6 717 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 ATG9BQ674R7 924 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LPCAT3Q6P1A2 487 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TMEM207Q6UWW9 146 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 OR2W3Q7Z3T1 314 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 DNAJB7Q7Z6W7 309 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 LRRTM1Q86UE6 522 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 TMEM200AQ86VY9 491 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 C4orf19Q8IY42 314 aa8.86□□□□□ -0.99
CLIP1-214ENST00000540539 C2CD4AQ8NCU7 369 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-214ENST00000540539 OR9Q2Q8NGE9 314 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms