RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 GMFGO60234 142 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 RAMP1O60894 148 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 NOL4O94818 638 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 OR4F21O95013 312 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 DUSP14O95147 198 aaKnown RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 LRATO95237 230 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 GUCA1CO95843 209 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 IGHV3-9P01782 118 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 KRT6BP04259 564 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 PCCBP05166 539 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 HBQ1P09105 142 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ZCCHC18P0CG32 403 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 SLC35E2P0CK97 266 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 TSPY4P0CV99 314 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 TSPY10P0CW01 314 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 PPIAL4GP0DN37 164 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CLUP10909 449 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 LAMP1P11279 417 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 KRT13P13646 458 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 SERPINA2P20848 420 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ATP6V1C1P21283 382 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 HTR2AP28223 471 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 EPHX2P34913 555 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 KRT6CP48668 564 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 HLCSP50747 726 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 NOVA1P51513 510 aaKnown RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 RPS8P62241 208 aaKnown RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 ZNF33BQ06732 778 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 FUT7Q11130 342 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ZSWIM7Q19AV6 140 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ADPRMQ3LIE5 342 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 USH1GQ495M9 461 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 GLYR1Q49A26 553 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 FAM74A3Q4VXF1 159 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 SLC22A10Q63ZE4 541 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 NIPAL3Q6P499 406 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 SLC39A4Q6P5W5 647 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 HACD2Q6Y1H2 254 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 MOB1BQ7L9L4 216 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 DPY19L4Q7Z388 723 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 HSD11B1LQ7Z5J1 315 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ACOT1Q86TX2 421 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CBWD2Q8IUF1 395 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 BPIFB2Q8N4F0 458 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 C11orf42Q8N5U0 333 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CSNK1A1LQ8N752 337 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ZBTB44Q8NCP5 570 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 STXBP6Q8NFX7 210 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 FNDC8Q8TC99 324 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 C11orf24Q96F05 449 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 PHYHIPLQ96FC7 376 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 DHTKD1Q96HY7 919 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 CCT8L2Q96SF2 557 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CNPY3Q9BT09 278 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 POLR3FQ9H1D9 316 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 SLC25A51Q9H1U9 297 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 MIEF1Q9NQG6 463 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 PNO1Q9NRX1 252 aaKnown RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 ZNF275Q9NSD4 429 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 EHFQ9NZC4 300 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CYTH4Q9UIA0 394 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 KLHL21Q9UJP4 597 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 LAMP5Q9UJQ1 280 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ATP6V0A2Q9Y487 856 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 OR10H1Q9Y4A9 318 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 MFHAS1Q9Y4C4 1052 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 PPIAL4AQ9Y536 164 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ALG6Q9Y672 507 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 CARMIL1Q5VZK9 1371 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 NCAPD2Q15021 1401 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 A0A0U1RQV5 110 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 IMPA2O14732 288 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 DUX1O43812 170 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PEX11AO75192 247 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 RHOBTB1O94844 696 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 VENTXO95231 258 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 SLC2A10O95528 541 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 JCHAINP01591 159 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 ASNSP08243 561 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 HSMCR30P0CW71 290 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PRG2P13727 222 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 MGMTP16455 207 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 FUT1P19526 365 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 CALRP27797 417 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 PSMA5P28066 241 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 CDH5P33151 784 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 ADRA1AP35348 466 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 CYLC1P35663 651 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 MDH1P40925 334 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 ALDH3B2P48448 385 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PRRC2AP48634 2157 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 POU3F4P49335 361 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 ERVPABLB-1P60509 514 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 RND3P61587 244 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PAX2Q02962 417 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 BCL2L1Q07817 233 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 KCNJ11Q14654 390 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 MESDQ14696 234 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 ATXN7L3Q14CW9 347 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 ZNF79Q15937 498 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms