RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CCNYL2	Q5T2Q4	361 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	CCDC197	Q8NCU1	140 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	LILRB1	Q8NHL6	650 aa	Predicted RBP	11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	ROBO4	Q8WZ75	1007 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	KLHL29	Q96CT2	875 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	VSTM2L	Q96N03	204 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	PAIP2	Q9BPZ3	127 aa	Known RBP	11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	PRRG4	Q9BZD6	226 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	MID2	Q9UJV3	735 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	MCTS1	Q9ULC4	181 aa	Known RBP	11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	ACOT9	Q9Y305	439 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	TNPO3	Q9Y5L0	923 aa	Known RBP	11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079	ZNF780B	Q9Y6R6	833 aa		11.12	□□□□□ -0.63
CAPN1-223	ENST00000533079		A0A096LNT2	108 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079		A0A096LPK6	155 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	CLOCK	O15516	846 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	EDF1	O60869	148 aa	Known RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	CLDN9	O95484	217 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	LTA4H	P09960	611 aa	Known RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	MTHFD2	P13995	350 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	PCSK2	P16519	638 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	ZNF17	P17021	662 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	FEN1	P39748	380 aa	Known RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	PRKAA2	P54646	552 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	GTF2H2	Q13888	395 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	TRMT12	Q53H54	448 aa	Known RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	FRG2	Q64ET8	278 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	ATG16L1	Q676U5	607 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	GTF2H2C	Q6P1K8	395 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	CLEC2A	Q6UVW9	174 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	RAPH1	Q70E73	1250 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	GGN	Q86UU5	652 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	DTX2	Q86UW9	622 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	SAMD14	Q8IZD0	417 aa	Predicted RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	METTL4	Q8N3J2	472 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	C1GALT1C1	Q96EU7	318 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	FRG2B	Q96QU4	278 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	TNFRSF13C	Q96RJ3	184 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	KCNK17	Q96T54	332 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	TRAF4	Q9BUZ4	470 aa	Predicted RBP	11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	FAIM2	Q9BWQ8	316 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	SHARPIN	Q9H0F6	387 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	DSN1	Q9H410	356 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	IPPK	Q9H8X2	491 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	HHATL	Q9HCP6	504 aa		11.11	□□□□□ -0.63
CAPN1-223	ENST00000533079	MED12	Q93074	2177 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	SCO2	O43819	266 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	PROC	P04070	461 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	GFAP	P14136	432 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	SLC25A16	P16260	332 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	ADH6	P28332	368 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	NUDT6	P53370	316 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	CORO7	P57737	925 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	TRA2B	P62995	288 aa	Known RBP	11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	MRPS35	P82673	323 aa	Known RBP	11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	LTB4R	Q15722	352 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	TSNAXIP1	Q2TAA8	658 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	PGGHG	Q32M88	737 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	ZNF628	Q5EBL2	1059 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	SSX8	Q7RTT4	187 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	COMMD6	Q7Z4G1	85 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	GOLGA7	Q7Z5G4	137 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	NUDCD3	Q8IVD9	361 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	OR52B6	Q8NGF0	335 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	OR6Y1	Q8NGX8	325 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	HSD17B8	Q92506	261 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	S100PBP	Q96BU1	408 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	CNRIP1	Q96F85	164 aa	Predicted RBP	11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	C7orf26	Q96N11	449 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	ZNF681	Q96N22	645 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	NTMT1	Q9BV86	223 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	MRPL1	Q9BYD6	325 aa	Known RBP	11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	POTEKP	Q9BYX7	375 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	SHCBP1L	Q9BZQ2	653 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	FAM107B	Q9H098	131 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	FGFR1OP2	Q9NVK5	253 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	TAS2R9	Q9NYW1	312 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	EMCN	Q9ULC0	261 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	RNF11	Q9Y3C5	154 aa		11.1	□□□□□ -0.63
CAPN1-223	ENST00000533079	IGHV4-30-2	A0A087WSY4	118 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	ELOA3D	A6NLF2	546 aa	Predicted RBP	11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	EIF1AY	O14602	144 aa	Known RBP	11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	KLHL2	O95198	593 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	SRD5A1	P18405	259 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	AGTR1	P30556	359 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	EIF1AX	P47813	144 aa	Known RBP	11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	CLK3	P49761	638 aa	Known RBP	11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	FAP	Q12884	760 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	DLG1	Q12959	904 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	IFT88	Q13099	833 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	PFKFB4	Q16877	469 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	FAM83E	Q2M2I3	478 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	TMEM44	Q2T9K0	475 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	ELOA3B	Q3SY89	546 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	GGTA1P	Q4G0N0	100 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	GTF2IRD2B	Q6EKJ0	949 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	PPP4R4	Q6NUP7	873 aa		11.09	□□□□□ -0.63
CAPN1-223	ENST00000533079	NPSR1	Q6W5P4	371 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms