RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PPIL2Q13356 520 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 LTB4RQ15722 352 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CHRNA6Q15825 494 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CNPY1Q3B7I2 92 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FAM174BQ3ZCQ3 159 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 IQCCQ4KMZ1 466 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ODF2Q5BJF6 829 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TMEM31Q5JXX7 168 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 BRMS1LQ5PSV4 323 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FAM182AQ5T1J6 154 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PTRHD1Q6GMV3 140 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 FUT10Q6P4F1 479 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PEX26Q7Z412 305 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 KCNMB4Q86W47 210 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CARM1Q86X55 608 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 VSTM4Q8IW00 320 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CLEC4FQ8N1N0 589 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 BBS5Q8N3I7 341 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 BANPQ8N9N5 519 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TRPV3Q8NET8 790 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 OR52M1Q8NGK5 317 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 OCC1Q8TAD7 63 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 UBA3Q8TBC4 463 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 SETD7Q8WTS6 366 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 HTR3CQ8WXA8 447 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF707Q96C28 371 aaPredicted RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 HAUS1Q96CS2 278 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FER1L6-AS2Q96M78 137 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FAM111AQ96PZ2 611 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PRAM1Q96QH2 718 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 PANX2Q96RD6 677 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 BPIFA3Q9BQP9 254 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TIPINQ9BVW5 301 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ABCG8Q9H221 673 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 CENPHQ9H3R5 247 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FNDC4Q9H6D8 234 aaPredicted RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 SYTL2Q9HCH5 934 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TREM1Q9NP99 234 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 MID1IP1Q9NPA3 183 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 DDX28Q9NUL7 540 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 ETNK2Q9NVF9 386 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 GID8Q9NWU2 228 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 SOHLH2Q9NX45 425 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 TMOD3Q9NYL9 352 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 VPS54Q9P1Q0 977 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 STX18Q9P2W9 335 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 KLK11Q9UBX7 282 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF107Q9UII5 783 aaPredicted RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 AURKCQ9UQB9 309 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 EIF3LQ9Y262 564 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF175Q9Y473 711 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 KLK4Q9Y5K2 254 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 AK9Q5TCS8 1911 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 FRMPD4Q14CM0 1322 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 EIF3AQ14152 1382 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 A2ML1A8K2U0 1454 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZNF518AQ6AHZ1 1483 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 AGLP35573 1532 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 KDM5CP41229 1560 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 LRP5O75197 1615 aa3.08□□□□□ -1.92
CD44-217ENST00000525348 ZC3H13Q5T200 1668 aaKnown RBP3.08□□□□□ -1.92
CD44-217ENST00000525348 CDC42BPBQ9Y5S2 1711 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 A0A087WWV3 80 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 BCLAF3A2AJT9 711 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 ZNF233A6NK53 670 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 E5RGE8 158 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SCO2O43819 266 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PSIP1O75475 530 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 CRCPO75575 148 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TOM1L1O75674 476 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 UFL1O94874 794 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PGLSO95336 258 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 NSA2O95478 260 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 HPP00738 406 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ASS1P00966 412 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 CSTAP01040 98 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 MT-ND2P03891 347 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PRG2P13727 222 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 LBPP18428 481 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 CXCR2P25025 360 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PIK3R1P27986 724 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PSMB4P28070 264 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 RRM2P31350 389 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SPAM1P38567 509 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SLC11A1P49279 550 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 GSK3BP49841 420 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SLC26A2P50443 739 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 P2RY4P51582 365 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 RAD23AP54725 363 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 AP1S2P56377 157 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 IFITM2Q01629 132 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ZNF33AQ06730 810 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 IL10RBQ08334 325 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 FADDQ13158 208 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TNK1Q13470 666 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ITPK1Q13572 414 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ZMYND11Q15326 602 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 MLF2Q15773 248 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 SMU1Q2TAY7 513 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 HFEQ30201 348 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms