RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MUC21Q5SSG8 566 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 LEG1Q6P5S2 330 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 LRRC31Q6UY01 552 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 MOB2Q70IA6 237 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 RUFY3Q7L099 469 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 Q7L0L9 218 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 NUFIP2Q7Z417 695 aaKnown RBP6.14□□□□□ -1.43
LSM1-202ENST00000520286 ZNRF1Q8ND25 227 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 OR52M1Q8NGK5 317 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 HCAR2Q8TDS4 363 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 SLC5A11Q8WWX8 675 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 LHX4Q969G2 390 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 NABP1Q96AH0 204 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 FAM114A2Q9NRY5 505 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 BARHL2Q9NY43 387 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 WWOXQ9NZC7 414 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 KLRF1Q9NZS2 232 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 MBD2Q9UBB5 411 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 C4AP0C0L4 1744 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 FER1L5A0AVI2 2057 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 LRIT2A6NDA9 550 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 PRR23AA6NEV1 266 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 FBLL1A6NHQ2 334 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 LRRC30A6NM36 301 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 RNF212BA8MTL3 300 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 A8MUI8 341 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 ARHGEF33A8MVX0 844 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 CTAGE5O15320 804 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 MAGEB3O15480 346 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 SPAG6O75602 509 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 ANP32DO95626 131 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 IGSF6O95976 241 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 CHRNA1P02708 482 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 RPA2P15927 270 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 UCP1P25874 307 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 OTX2P32243 289 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 SAA4P35542 130 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 PGFP49763 221 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 FKBP3Q00688 224 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 CALCOCO2Q13137 446 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 FASTKD3Q14CZ7 662 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 ZNF146Q15072 292 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 CFAP157Q5JU67 520 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 SAMD12Q8N8I0 201 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 ZNF248Q8NDW4 579 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 OR1B1Q8NGR6 318 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 N4BP2L2Q92802 583 aaPredicted RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 BIRC7Q96CA5 298 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 C19orf43Q9BQ61 176 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 ZSCAN5AQ9BUG6 496 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 RBM4Q9BWF3 364 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 UPF3AQ9H1J1 476 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 MOB1AQ9H8S9 216 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 SP140LQ9H930 580 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 THEGQ9P2T0 379 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 THAP10Q9P2Z0 257 aaPredicted RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 SEC14L4Q9UDX3 406 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 SMC3Q9UQE7 1217 aa6.13□□□□□ -1.43
LSM1-202ENST00000520286 MRPS7Q9Y2R9 242 aaKnown RBP6.13□□□□□ -1.43
LSM1-202ENST00000520286 IGLV7-46A0A075B6I9 117 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 IGHV4-30-2A0A087WSY4 118 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 MEX3AA1L020 520 aaKnown RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 WASHC1A8K0Z3 465 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 JAK2O60674 1132 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 SHOX2O60902 331 aaPredicted RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 SMC2O95347 1197 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 CCDC159P0C7I6 412 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 MAP2P11137 1827 aaKnown RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 PAX7P23759 505 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 ACADVLP49748 655 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 SLC7A2P52569 658 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 SRPXP78539 464 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 NECTIN1Q15223 517 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 MS4A18Q3C1V0 323 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 KRTAP24-1Q3LI83 254 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 ARMCX5Q6P1M9 558 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 VASH2Q86V25 355 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 CCDC71Q8IV32 467 aaPredicted RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 TAF1LQ8IZX4 1826 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 OR52J3Q8NH60 311 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 BPIFA3Q9BQP9 254 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 BARHL1Q9BZE3 327 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 UPF3BQ9BZI7 483 aaKnown RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 GORASP2Q9H8Y8 452 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 IL1RL2Q9HB29 575 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 DCAF13Q9NV06 445 aaKnown RBP6.12□□□□□ -1.43
LSM1-202ENST00000520286 FBXO7Q9Y3I1 522 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 LRP12Q9Y561 859 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 AP4B1Q9Y6B7 739 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 IKBKGQ9Y6K9 419 aa6.12□□□□□ -1.43
LSM1-202ENST00000520286 FLT4P35916 1363 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 TRGV8A0A0C4DH27 118 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 TRIM64CA6NLI5 447 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 GOLGA6L19H0YKK7 550 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 K7EQG2 157 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 K7EQM0 130 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 SNAP91O60641 907 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 SDC3O75056 442 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 HMMRO75330 724 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 GLRA2P23416 452 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms