RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 KBTBD12Q3ZCT8 623 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 GRTP1Q5TC63 336 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 SIGIRRQ6IA17 410 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 FIGLAQ6QHK4 219 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 SUSD1Q6UWL2 747 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 IFT20Q8IY31 132 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 DNAJC22Q8N4W6 341 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 OR2L3Q8NG85 312 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 OR2A1Q8NGT9 310 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 PDLIM5Q96HC4 596 aaKnown RBP6.41□□□□□ -1.38
SDCBP-208ENST00000520228 HARBI1Q96MB7 349 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 CSF3RQ99062 836 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 FMO2Q99518 471 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 CPNE1Q99829 537 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 PCGF1Q9BSM1 259 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 ACAT2Q9BWD1 397 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 SLC7A5P2Q9GIP4 190 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 GHITMQ9H3K2 345 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 GPN2Q9H9Y4 310 aaPredicted RBP6.41□□□□□ -1.38
SDCBP-208ENST00000520228 C1RLQ9NZP8 487 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 SELENONQ9NZV5 590 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 PLCL2Q9UPR0 1127 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 PDE10AQ9Y233 779 aa6.41□□□□□ -1.38
SDCBP-208ENST00000520228 UNC13CQ8NB66 2214 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 LOC101059948A0A1B0GTJ6 334 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 C1orf226A1L170 272 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 MYO1GB0I1T2 1018 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 GTPBP1O00178 669 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 ZNF749O43361 778 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 HCRTR1O43613 425 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 HNRNPCL1O60812 293 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 TIPRLO75663 272 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PPP1R3DO95685 299 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 C1QAP02745 245 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 HBQ1P09105 142 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 RHOXF2BP0C7M4 288 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 TCN2P20062 427 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 CCKARP32238 428 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PHBP35232 272 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SPRP35270 261 aaPredicted RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 DLSTP36957 453 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 GABRA4P48169 554 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 AP1S2P56377 157 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PRDX1Q06830 199 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 NAB1Q13506 487 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PHKG1Q16816 387 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 DEFB110Q30KQ9 67 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 GKAP1Q5VSY0 366 aaPredicted RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 AGTRAPQ6RW13 159 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 TMEM207Q6UWW9 146 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 CEP97Q8IW35 865 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SLC38A9Q8NBW4 561 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PPFIBP2Q8ND30 876 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SNRNP27Q8WVK2 155 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 ANKRD7Q92527 254 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 MR1Q95460 341 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 MED8Q96G25 268 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 CYTH2Q99418 400 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 GPR22Q99680 433 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 RBBP8Q99708 897 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SELENOSQ9BQE4 189 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 RHOXF2Q9BQY4 288 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 DPH7Q9BTV6 452 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 PCBD2Q9H0N5 130 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 CAB39LQ9H9S4 337 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 POPDC3Q9HBV1 291 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 MRPS30Q9NP92 439 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 LHX9Q9NQ69 397 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 CCDC177Q9NQR7 707 aaPredicted RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 ACSS1Q9NUB1 689 aaPredicted RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 ABCF3Q9NUQ8 709 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 UTP6Q9NYH9 597 aaKnown RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 EURLQ9NYK6 297 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 NINJ2Q9NZG7 142 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 STOX2Q9P2F5 926 aaPredicted RBP6.4□□□□□ -1.38
SDCBP-208ENST00000520228 TAC3Q9UHF0 121 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 IL17BQ9UHF5 180 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 SNX7Q9UNH6 387 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 KLK4Q9Y5K2 254 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 AP1M2Q9Y6Q5 423 aa6.4□□□□□ -1.38
SDCBP-208ENST00000520228 ZNF106Q9H2Y7 1883 aaKnown RBP6.4□□□□□ -1.39
SDCBP-208ENST00000520228 COL27A1Q8IZC6 1860 aaPredicted RBP6.39□□□□□ -1.39
SDCBP-208ENST00000520228 OR2A25A4D2G3 310 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 C21orf140B9A014 251 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 H3BMH7 237 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 CDC7O00311 574 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 SRPX2O60687 465 aaPredicted RBP6.39□□□□□ -1.39
SDCBP-208ENST00000520228 CTSVO60911 334 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 ACSL3O95573 720 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 GUCA1CO95843 209 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 CCDC166P0CW27 439 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 STMN1P16949 149 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 F8A1P23610 371 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 IMPA1P29218 277 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 CRABP2P29373 138 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 RORAP35398 523 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 RAB10P61026 200 aa6.39□□□□□ -1.39
SDCBP-208ENST00000520228 RPS15P62841 145 aaKnown RBP6.39□□□□□ -1.39
SDCBP-208ENST00000520228 MC1RQ01726 317 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms