RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 C1GALT1C1Q96EU7 318 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 INPP5KQ9BT40 448 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 BRINP2Q9C0B6 783 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 NECTIN3Q9NQS3 549 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 MGAT4AQ9UM21 535 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 TRAV20A0A0B4J274 112 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 HYKKA2RU49 373 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PMS2P1A4D2B8 440 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 LILRA5A6NI73 299 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 CXCR6O00574 342 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 RFXANKO14593 260 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PGRMC2O15173 223 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF749O43361 778 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PIP5K1CO60331 668 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 UGDHO60701 494 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 KLHL18O94889 574 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 HRH2P25021 359 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 CHI3L1P36222 383 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 DCTP40126 519 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PIK3CBP42338 1070 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 DSTNP60981 165 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 RPS26P62854 115 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 TAGLNQ01995 201 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 IRF3Q14653 427 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 NNATQ16517 81 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 KRT73Q86Y46 540 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 MFSD9Q8NBP5 474 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 COQ8AQ8NI60 647 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF675Q8TD23 568 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC7A6Q92536 515 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 KAT2AQ92830 837 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC38A4Q969I6 547 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 OR2A5Q96R48 311 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 TRAF4Q9BUZ4 470 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 SLA2Q9H6Q3 261 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 GPR45Q9Y5Y3 372 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PLXND1Q9Y4D7 1925 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 OR2A25A4D2G3 310 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 FLRT2O43155 660 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 GATBO75879 557 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SLITRK5O94991 958 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 C6orf47O95873 294 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 GRK5P34947 590 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 NOVA1P51513 510 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OGFOD3Q6PK18 319 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF574Q6ZN55 896 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ABHD13Q7L211 337 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 LUZP2Q86TE4 346 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SUMF1Q8NBK3 374 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TTLQ8NG68 377 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR2L5Q8NG80 312 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR4A15Q8NGL6 344 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 DUSP26Q9BV47 211 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ASPNQ9BXN1 380 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 C11orf54Q9H0W9 315 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 AKAP7Q9P0M2 348 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 MAP4K5Q9Y4K4 846 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SDK2Q58EX2 2172 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 GABRR3A8MPY1 467 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 H0YAE9 185 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 H3BN98 237 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 RGS13O14921 159 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 LRRTM2O43300 516 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SSNA1O43805 119 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PRICKLE3O43900 615 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR10H2O60403 315 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PRSS23O95084 383 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ERGP11308 486 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 NT5EP21589 574 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 HIST1H1TP22492 207 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 RPP38P78345 283 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ST3GAL4Q11206 333 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 STX4Q12846 297 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 NKG7Q16617 165 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 GGTA1PQ4G0N0 100 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 VWA2Q5GFL6 755 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF425Q6IV72 752 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 EIF3MQ7L2H7 374 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ASCL5Q7RTU5 278 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TRIM46Q7Z4K8 759 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TP53INP1Q96A56 240 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TCTN2Q96GX1 697 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 DPH2Q9BQC3 489 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SPATA9Q9BWV2 254 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC22A4Q9H015 551 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 VAPAQ9P0L0 249 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 RHCGQ9UBD6 479 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 DNAJB9Q9UBS3 223 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 RARRES3Q9UL19 164 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PPT2Q9UMR5 302 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PLCL2Q9UPR0 1127 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ENTPD4Q9Y227 616 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PCDHGA5Q9Y5G8 931 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 SPACA6W5XKT8 324 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 NCOR2Q9Y618 2525 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TP53BP1Q12888 1972 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 IGHV5-10-1A0A0J9YXX1 117 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 A0A1W2PP18 115 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ELOVL7A1L3X0 281 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 DCDC2BA2VCK2 349 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms