RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MAGEA5P43359 124 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 RND3P61587 244 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 RPL8P62917 257 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ELP6Q0PNE2 266 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZNF154Q13106 437 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 PEX6Q13608 980 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ATXN7L3Q14CW9 347 aaPredicted RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 MAPK6Q16659 721 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 GSG1Q2KHT4 349 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 TMEM52BQ4KMG9 183 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 PAN3Q58A45 887 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CELF3Q5SZQ8 465 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 BLOC1S2Q6QNY1 142 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 PAMR1Q6UXH9 720 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 DPY19L4Q7Z388 723 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 C9orf40Q8IXQ3 194 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SPEM1Q8N4L4 309 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CNIH3Q8TBE1 160 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 TMEM80Q96HE8 168 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 VPS39Q96JC1 886 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CASD1Q96PB1 797 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 TSSK1BQ9BXA7 367 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SLC7A10Q9NS82 523 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CGNQ9P2M7 1197 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ANAPC7Q9UJX3 599 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SMC3Q9UQE7 1217 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 L3MBTL1Q9Y468 752 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 MMP24Q9Y5R2 645 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SMAD5-AS1Q9Y6J3 95 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CACNA1FO60840 1977 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 FRG2CA6NGY1 282 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 SAGE2PA6NJ88 616 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR6C65A6NJZ3 312 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 A8MUI8 341 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 CTAGE5O15320 804 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 STX7O15400 261 aaKnown RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 NUDT21O43809 227 aaKnown RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 UFL1O94874 794 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 CD55P08174 381 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 PDHBP11177 359 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 FASP25445 335 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 IL2RGP31785 369 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 VLDLRP98155 873 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 SNTB2Q13425 540 aaKnown RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 DPYSL3Q14195 570 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 TATDN3Q17R31 274 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 SLC36A3Q495N2 470 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 GLYR1Q49A26 553 aaPredicted RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 NADK2Q4G0N4 442 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 FAM120AOSQ5T036 256 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 UTF1Q5T230 341 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 SLC25A24Q6NUK1 477 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 ARMCX2Q7L311 632 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 TMEM17Q86X19 198 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR9A4Q8NGU2 314 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 NANPQ8TBE9 248 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 M1APQ8TC57 530 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 TRUB1Q8WWH5 349 aaKnown RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 DPH7Q9BTV6 452 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 MIEF1Q9NQG6 463 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 PNO1Q9NRX1 252 aaKnown RBP3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 GSTK1Q9Y2Q3 226 aa3.05□□□□□ -1.92
HMGB1P28-201ENST00000507778 ESYT2A0FGR8 921 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR1F1O43749 312 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 B3GAT3O94766 335 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 IGF1P05019 195 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 ATP6V1C1P21283 382 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 DRD5P21918 477 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 BDKRB1P46663 353 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 DHPSP49366 369 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 MEOX2P50222 304 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 HSD17B7P56937 341 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 RPL32P62910 135 aaKnown RBP3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 TAF7Q15545 349 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 LCE1EQ5T753 118 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 PVRIGQ6DKI7 326 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZDHHC21Q8IVQ6 265 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZBED8Q8IZ13 594 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 CADM2Q8N3J6 435 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 CD177Q8N6Q3 437 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 LINC00612Q8N6U2 182 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR2T33Q8NG76 320 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZPLD1Q8TCW7 415 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 MRAPQ8TCY5 172 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 SPRYD4Q8WW59 207 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 RAB7BQ96AH8 199 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 SERAC1Q96JX3 654 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 PAXXQ9BUH6 204 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 IKZF5Q9H5V7 419 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 Q9UF83 564 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 CHRNA9Q9UGM1 479 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 SAMD4AQ9UPU9 718 aaKnown RBP3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR10H1Q9Y4A9 318 aa3.04□□□□□ -1.92
HMGB1P28-201ENST00000507778 TDRD15B5MCY1 1934 aaKnown RBP3.03□□□□□ -1.92
HMGB1P28-201ENST00000507778 ATP10DQ9P241 1426 aa3.03□□□□□ -1.92
HMGB1P28-201ENST00000507778 ANKRD30BQ9BXX2 1392 aa3.03□□□□□ -1.92
HMGB1P28-201ENST00000507778 FAM168BA1KXE4 195 aa3.03□□□□□ -1.92
HMGB1P28-201ENST00000507778 PPIAL4DF5H284 164 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms