RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SLC2A10O95528 541 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 IGHA1P01876 353 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HLA-DQB1P01920 261 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GAAP10253 952 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PPP3R1P63098 170 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ACSM1Q08AH1 577 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HTR4Q13639 388 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 LRRC32Q14392 662 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 INSL4Q14641 139 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SMAD2Q15796 467 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FAM111BQ6SJ93 734 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RRM2BQ7LG56 351 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TMEM255BQ8WV15 326 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SENP5Q96HI0 755 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DEPDC7Q96QD5 511 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HDHD5Q9BXW7 423 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRRG3Q9BZD7 231 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NUFIP1Q9UHK0 495 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CBLCQ9ULV8 474 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC17A4Q9Y2C5 497 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 STON1Q9Y6Q2 735 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZSCAN5BA6NJL1 495 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CENPXA8MT69 81 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CASKO14936 926 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SCAMP1O15126 338 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HPGDSO60760 199 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NCR1O76036 304 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KAT7O95251 611 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GJA4P35212 333 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TSFMP43897 325 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RPE65Q16518 533 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PGGHGQ32M88 737 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF791Q3KP31 576 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CNIH2Q6PI25 160 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FRRS1Q6ZNA5 592 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF620Q6ZNG0 422 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PLEKHM3Q6ZWE6 761 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DGLUCYQ7Z3D6 616 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C16orf62Q7Z3J2 963 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ABI3BPQ7Z7G0 1075 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 YAF2Q8IY57 180 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 UBE2J2Q8N2K1 259 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RFKQ969G6 155 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC41A3Q96GZ6 507 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MCHR1Q99705 422 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TMED9Q9BVK6 235 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PHF7Q9BWX1 381 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RNF121Q9H920 327 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MOSPD1Q9UJG1 213 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GABRPO00591 440 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CTRB1P17538 263 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MYL9P24844 172 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HTR1FP30939 366 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RGS8P57771 180 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RACK1P63244 317 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 BTN3A2P78410 334 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DSG2Q14126 1118 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CDK10Q15131 360 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 P2RY14Q15391 338 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 EOGTQ5NDL2 527 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CTRB2Q6GPI1 263 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MBOAT2Q6ZWT7 520 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NRROSQ86YC3 692 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MARCH9Q86YJ5 346 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KCT2Q8NC54 265 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC16A11Q8NCK7 471 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SIMC1Q8NDZ2 872 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SRFBP1Q8NEF9 429 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 OR7G2Q8NG99 324 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SPRYD4Q8WW59 207 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NECTIN4Q96NY8 510 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TBC1D17Q9HA65 648 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MED17Q9NVC6 651 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 IL20RAQ9UHF4 553 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 BOLA1Q9Y3E2 137 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF780BQ9Y6R6 833 aa14.99□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 J3QRE1 110 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SOCS6O14544 535 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CDC42EP2O14613 210 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CELP19835 753 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 EVX1P49640 407 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 VN1R4Q7Z5H5 301 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KLHL36Q8N4N3 616 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CDS1Q92903 461 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FRMD6Q96NE9 622 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 AIFM2Q9BRQ8 373 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C1QTNF2Q9BXJ5 285 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RNF32Q9H0A6 362 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RANGRFQ9HD47 186 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 B3GAT2Q9NPZ5 323 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HINT3Q9NQE9 182 aaKnown RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NTMQ9P121 344 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF443Q9Y2A4 671 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GPSM3Q9Y4H4 160 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CSNK1G3Q9Y6M4 447 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SDK1Q7Z5N4 2213 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 B8ZZF3 427 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 AGRPO00253 132 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DVL2O14641 736 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RNGTTO60942 597 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms