RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ATG2AQ2TAZ0 1938 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 MYO10Q9HD67 2058 aa7.77□□□□□ -1.17
USP54-215ENST00000497106 CD1EP15812 388 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ZNF3P17036 446 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 HOXB9P17482 250 aaPredicted RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 PIGAP37287 484 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC9A3P48764 834 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 BTG2P78543 158 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TEKQ02763 1124 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ALG10BQ5I7T1 473 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ENTPD8Q5MY95 495 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 PDZK1Q5T2W1 519 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SFTPA2Q8IWL1 248 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 C16orf52Q8NHV5 167 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 FANK1Q8TC84 345 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 NODALQ96S42 347 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC29A1Q99808 456 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 DDA1Q9BW61 102 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 AMBRA1Q9C0C7 1298 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC38A1Q9H2H9 487 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP54-215ENST00000497106 ZNF264O43296 627 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TDGF1P13385 188 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 PRKACGP22612 351 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC16A1P53985 500 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 RRADP55042 308 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SPEM2Q0P670 501 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 CSRP2Q16527 193 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ZSCAN1Q8NBB4 408 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 FAM98AQ8NCA5 519 aaKnown RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 ADAMTS16Q8TE57 1224 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 FER1L6-AS2Q96M78 137 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 KLHL21Q9UJP4 597 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 RABL2BQ9UNT1 228 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC6A5Q9Y345 797 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TCRBV16S1A1N1A0A5B0 115 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 XKRYO14609 159 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 PLD2O14939 933 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SLC16A6O15403 523 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TPST2O60704 377 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 PRSS23O95084 383 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 UTS2O95399 124 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TFPIP10646 304 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 OTX2P32243 289 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 GSSP48637 474 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SUMO3P55854 103 aaPredicted RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 EEF1A2Q05639 463 aaKnown RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 OR1Q1Q15612 314 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TYW3Q6IPR3 259 aaKnown RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 BCORP1Q8N888 145 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 OR2T33Q8NG76 320 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 OR8K3Q8NH51 312 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TMEM239Q8WW34 195 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TTC9Q92623 222 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 IFT27Q9BW83 186 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TMEM121BQ9BXQ6 578 aaPredicted RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 VN1R1Q9GZP7 353 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SACM1LQ9NTJ5 587 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 RHCGQ9UBD6 479 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 B4GALT7Q9UBV7 327 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ZNF639Q9UID6 485 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 C4orf47A7E2U8 309 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 PTGES3LE9PB15 166 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TBX6O95947 436 aaPredicted RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 MYF5P13349 255 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 FKBP2P26885 142 aaKnown RBP7.76□□□□□ -1.17
USP54-215ENST00000497106 TSPAN31Q12999 210 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SNTA1Q13424 505 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ARMC4Q5T2S8 1044 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ARHGAP11AQ6P4F7 1023 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 ZNF773Q6PK81 442 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 MED25Q71SY5 747 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 TSLPQ969D9 159 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 C11orf16Q9NQ32 467 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 SEMA4GQ9NTN9 838 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 HPF1Q9NWY4 346 aa7.76□□□□□ -1.17
USP54-215ENST00000497106 AKAP8O43823 692 aaKnown RBP7.75□□□□□ -1.17
USP54-215ENST00000497106 POU2F1P14859 743 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 GGT2P36268 569 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 PRPS1P60891 318 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 NNATQ16517 81 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 KDM4DQ6B0I6 523 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 FRRS1Q6ZNA5 592 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 MBOAT2Q6ZWT7 520 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 NANOGNBQ7Z5D8 188 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 TSSK6Q9BXA6 273 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 LAT2Q9GZY6 243 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 CTPS2Q9NRF8 586 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 MED17Q9NVC6 651 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 SLC7A7Q9UM01 511 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 CDH10Q9Y6N8 788 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 MCIDASD6RGH6 385 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 CHP2O43745 196 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 FADS2O95864 444 aaKnown RBP7.75□□□□□ -1.17
USP54-215ENST00000497106 CBX7O95931 251 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 P04436 131 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 ELAVL4P26378 380 aaKnown RBP7.75□□□□□ -1.17
USP54-215ENST00000497106 PSMB9P28065 219 aa7.75□□□□□ -1.17
USP54-215ENST00000497106 CLK1P49759 484 aaKnown RBP7.75□□□□□ -1.17
USP54-215ENST00000497106 PIN1Q13526 163 aaPredicted RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms