RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 G3V2L1 256 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 C1SP09871 688 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 PET100P0DJ07 73 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ABOP16442 354 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TNFRSF1BP20333 461 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 PIGFQ07326 219 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CEACAM7Q14002 265 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SAMD8Q96LT4 415 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM168Q9H0V1 697 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 NPIPA5A0A0B4J1W7 369 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 NPIPA7E9PJI5 369 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ZFAND5O76080 213 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 C1orf105O95561 183 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 STSP08842 583 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 NPIPA8P0DM63 369 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 VASPP50552 380 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 GALEQ14376 348 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 GNMTQ14749 295 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 UGT8Q16880 541 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 GTDC1Q4AE62 458 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 DCST2Q5T1A1 773 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 C22orf42Q6IC83 251 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 DESI1Q6ICB0 168 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ARL5BQ96KC2 179 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM68Q96MH6 324 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 PINK1Q9BXM7 581 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 COPZ2Q9P299 210 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 LHX3Q9UBR4 397 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 HSPE1-MOB4S4R3N1 261 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ZBTB42B2RXF5 422 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SYT7O43581 403 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SCRG1O75711 98 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TPPPO94811 219 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 MMP2P08253 660 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 PSMB5P28074 263 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 EEF1A1P68104 462 aaKnown RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SPHARQ15513 63 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 RAB11BQ15907 218 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 MRPL21Q7Z2W9 205 aaKnown RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ARL14Q8N4G2 192 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CNEP1R1Q8N9A8 125 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TCTEX1D2Q8WW35 142 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 UTP4Q969X6 686 aaKnown RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 MYNNQ9NPC7 610 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SLC35A3Q9Y2D2 325 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 GPR52Q9Y2T5 361 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 LOC285095A0A1B0GVY8 99 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SMCO3A2RU48 225 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 EEF1E1O43324 174 aaKnown RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 OR2T1O43869 369 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 BMP2P12643 396 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CD46P15529 392 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 RGRP47804 291 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 MTNR1AP48039 350 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 EIF2B1Q14232 305 aaKnown RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ATXN7L3Q14CW9 347 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM31Q5JXX7 168 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SCGB1C1Q8TD33 95 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CDS1Q92903 461 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 NELFAQ9H3P2 528 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 SLAMF7Q9NQ25 335 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 PRSS16Q9NQE7 514 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 ZNF226Q9NYT6 803 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CCL26Q9Y258 94 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 AFF3P51826 1226 aaKnown RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ARF3P61204 181 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ARF1P84077 181 aaKnown RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 TAGLNQ01995 201 aaKnown RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 AGAP6Q5VW22 663 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 AWAT2Q6E213 333 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 AGAP4Q96P64 663 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 LHPPQ9H008 270 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 GSTO2Q9H4Y5 243 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 RIMS3Q9UJD0 308 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 KDM3BQ7LBC6 1761 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 HMX3A6NHT5 357 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 MYOGP15173 224 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 SLC5A2P31639 672 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 AGAP7PQ5VUJ5 663 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 FCRLBQ6BAA4 426 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 NETO1Q8TDF5 533 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 TCTN2Q96GX1 697 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ADOQ96SZ5 270 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 MGLLQ99685 303 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 BIN3Q9NQY0 253 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 COQ3Q9NZJ6 369 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 MYH11P35749 1972 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ICMTO60725 284 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 IGHEP01854 428 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 UCHL1P09936 223 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 EXOSC7Q15024 291 aaKnown RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ALKAL1Q6UXT8 129 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 BAIAP2L2Q6UXY1 529 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ZFP41Q8N8Y5 198 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 OR5D16Q8NGK9 328 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 SPPL3Q8TCT6 385 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 INSM2Q96T92 566 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-215ENST00000496447 ZNF160Q9HCG1 818 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 CAMK2AQ9UQM7 478 aa12.37□□□□□ -0.43
PTPRF-215ENST00000496447 SCN11AQ9UI33 1791 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms