RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 POLR1CO15160 346 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 NCR1O76036 304 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PVALBP20472 110 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ELOCQ15369 112 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 NXNL2Q5VZ03 156 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ALKBH2Q6NS38 261 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 C3P1Q6ZMU1 363 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 CFAP77Q6ZQR2 320 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF615Q8N8J6 731 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ANKK1Q8NFD2 765 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TRMT10AQ8TBZ6 339 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 GNPDA2Q8TDQ7 276 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PELI2Q9HAT8 420 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TXNL4BQ9NX01 149 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 NOP16Q9Y3C1 178 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 DNAJC13O75165 2243 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 KCNK5O95279 499 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 SCG5P05408 212 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 CCKBRP32239 447 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 GPR4P46093 362 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ARFIP1P53367 373 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 SCGB2B2Q4G0G5 96 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PYHIN1Q6K0P9 492 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 PM20D2Q8IYS1 436 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF527Q8NB42 609 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 ZFAND1Q8TCF1 268 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 DHRS9Q9BPW9 319 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM185BQ9H7F4 350 aa15.34■□□□□ 0.05
CCDC88B-209ENST00000494080 KNTC1P50748 2209 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 OR5K4A6NMS3 321 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 RGS9O75916 674 aaPredicted RBP15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 CFL1P23528 166 aaKnown RBP15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 TRIM46Q7Z4K8 759 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 IL17RDQ8NFM7 739 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 THSD1Q9NS62 852 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 B3GNT2Q9NY97 397 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 CKLFQ9UBR5 152 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 CLEC2DQ9UHP7 191 aa15.33■□□□□ 0.05
CCDC88B-209ENST00000494080 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF780AO75290 641 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC22A5O76082 557 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 Q6ZSR6 202 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF676Q8N7Q3 588 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 OR9A2Q8NGT5 310 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 FAM3CQ92520 227 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 INSM2Q96T92 566 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 GNG8Q9UK08 70 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 GMEB2Q9UKD1 530 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 LOC100509620A0A075B734 347 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ANTXRLA6NF34 631 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 TEX46H3BTG2 121 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 C1QBP02746 253 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 PVRP15151 417 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 NKG7Q16617 165 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 PHF19Q5T6S3 580 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 SLCO4C1Q6ZQN7 724 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 L3MBTL4Q8NA19 623 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF566Q969W8 418 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 PEX11GQ96HA9 241 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ASB4Q9Y574 426 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 SPDEFO95238 335 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 TAS2R43P59537 309 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEM240Q5SV17 173 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF362Q5T0B9 420 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC22A10Q63ZE4 541 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 IL20RBQ6UXL0 311 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 RPTNQ6XPR3 784 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 OR2T33Q8NG76 320 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 OR6F1Q8NGZ6 308 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 ACTL8Q9H568 366 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC25A37Q9NYZ2 338 aa15.33■□□□□ 0.04
CCDC88B-209ENST00000494080 CACNA1CQ13936 2221 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 PRRT4C9JH25 899 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 H0YIV9 168 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 VAMP1P23763 118 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC19A1P41440 591 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 MAP4K2Q12851 820 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 PON3Q15166 354 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 THAP6Q8TBB0 222 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 SHDQ96IW2 340 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 NUBP2Q9Y5Y2 271 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 PFN3P60673 137 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 COL28A1Q2UY09 1125 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 B3GLCTQ6Y288 498 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 RTL10Q7L3V2 364 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 ARMC10Q8N2F6 343 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 OR8S1Q8NH09 359 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 FKBP10Q96AY3 582 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 MYNNQ9NPC7 610 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 FBXL3Q9UKT7 428 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 F5H0A9 414 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 NPC1O15118 1278 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 GPX5O75715 221 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 CSTAP01040 98 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 RBM34P42696 430 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 GZMKP49863 264 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 CTBP2P56545 445 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 HOXC5Q00444 222 aa15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 PRDX1Q06830 199 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-209ENST00000494080 ZMAT1Q5H9K5 638 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms