RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CTAGE3PQ8IX95 158 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 C1orf52Q8N6N3 182 aaKnown RBP12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF525Q8N782 197 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 TBL1XR1Q9BZK7 514 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 MANSC1Q9H8J5 431 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 L2HGDHQ9H9P8 463 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 Q9N2J8 555 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 GIMAP4Q9NUV9 329 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 SENP1Q9P0U3 644 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 CPSF2Q9P2I0 782 aaKnown RBP12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 MCM8Q9UJA3 840 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 PCTPQ9UKL6 214 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 A0A0J9YW62 118 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 KLHL2O95198 593 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 PSMG1O95456 288 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 ESRRBO95718 433 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 ADAP00813 363 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 PDYNP01213 254 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 ME2P23368 584 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 MPIP34949 423 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 LSM11P83369 360 aaKnown RBP eCLIP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 NAB1Q13506 487 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 PPA1Q15181 289 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 RAB35Q15286 201 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 SH2D4BQ5SQS7 431 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 KLC3Q6P597 504 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 Q6ZT83 130 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 C3orf62Q6ZUJ4 267 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 NUFIP2Q7Z417 695 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 KLHL7Q8IXQ5 586 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 RFLNBQ8N5W9 214 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 PTGR2Q8N8N7 351 aaPredicted RBP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 ACTRT2Q8TDY3 377 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 ABHD3Q8WU67 409 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 CPNE4Q96A23 557 aaPredicted RBP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 EXOSC8Q96B26 276 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 GPR78Q96P69 363 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 TRIM31Q9BZY9 425 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 SLC35C2Q9NQQ7 365 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 FARSBQ9NSD9 589 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 TMCO1Q9UM00 188 aa12.62□□□□□ -0.39
PRPF40A-211ENST00000493468 MGAM2Q2M2H8 2515 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 STX16-NPEPL1H3BU86 382 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 STX16O14662 325 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 ABCD4O14678 606 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 UTS2O95399 124 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 C2P06681 752 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 IL3P08700 152 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 HSD3B1P14060 373 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 HSD3B2P26439 372 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 CSTF3Q12996 717 aaKnown RBP12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 HEPACAMQ14CZ8 416 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 PLPPR5Q32ZL2 321 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 SGO1Q5FBB7 561 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 TECRLQ5HYJ1 363 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 CPTPQ5TA50 214 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 APOOLQ6UXV4 268 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 IL17RELQ6ZVW7 336 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 TRABD2AQ86V40 505 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 P2RY8Q86VZ1 359 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 LRRC8AQ8IWT6 810 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 SLC35F6Q8N357 371 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 PPM1NQ8N819 430 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 OR4F6Q8NGB9 312 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 SELENOMQ8WWX9 145 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 OSTF1Q92882 214 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 REXO5Q96IC2 774 aaKnown RBP12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 KLHL15Q96M94 604 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 RNF145Q96MT1 663 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 DHRS9Q9BPW9 319 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 VPS29Q9UBQ0 182 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 SNX6Q9UNH7 406 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 C19orf53Q9UNZ5 99 aaPredicted RBP12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 MGAT4BQ9UQ53 548 aa12.61□□□□□ -0.39
PRPF40A-211ENST00000493468 A0A1W2PRB8 838 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 SLC35F4A4IF30 521 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TTC36A6NLP5 189 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF814B7Z6K7 855 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 ALG1L2C9J202 215 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 NGFRP08138 427 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TCP1P17987 556 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 CFPP27918 469 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 CARD18P57730 90 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNHIT3Q15649 155 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TCHHL1Q5QJ38 904 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TIMM23BQ5SRD1 257 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 Q6ZSR9 355 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TUSC5Q8IXB3 177 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 FBXL14Q8N1E6 418 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 MUC15Q8N387 334 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 MUCL1Q96DR8 90 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 NSUN5Q96P11 429 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 NPAS1Q99742 590 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 LMF2Q9BU23 707 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 ADAM19Q9H013 955 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 CHODLQ9H9P2 273 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 C3orf14Q9HBI5 128 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 TIGARQ9NQ88 270 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 MED17Q9NVC6 651 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 NPAP1Q9NZP6 1156 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms