RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 FAM89BQ8N5H3 189 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 C10orf53Q8N6V4 93 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF321PQ8N8H1 164 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RASGEF1AQ8N9B8 481 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 Q8N9G6 341 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SNX31Q8N9S9 440 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC197Q8NCU1 140 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC12Q8WUD4 166 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GATAD1Q8WUU5 269 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SEPT8Q92599 483 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RASL10AQ92737 203 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TCEAL3Q969E4 200 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TSACCQ96A04 125 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RAB7BQ96AH8 199 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CIDECQ96AQ7 238 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 VPS33AQ96AX1 596 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 DGCR14Q96DF8 476 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TMA16Q96EY4 203 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 OTUB1Q96FW1 271 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 PGM2Q96G03 612 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF558Q96NG5 402 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RPRD1AQ96P16 312 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 AGAP4Q96P64 663 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 OPALINQ96PE5 141 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 BTBD9Q96Q07 612 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM237Q96Q45 408 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GAL3ST4Q96RP7 486 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 FEVQ99581 238 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CPNE1Q99829 537 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 C17orf62Q9BQA9 187 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SEC22CQ9BRL7 303 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CNPY3Q9BT09 278 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NTMT1Q9BV86 223 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ACPTQ9BZG2 426 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 THAP2Q9H0W7 228 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 STMN4Q9H169 189 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM245Q9H330 911 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NCOR1P1Q9H4R4 102 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 POMKQ9H5K3 350 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ECT2Q9H8V3 914 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GORASP2Q9H8Y8 452 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MCCC2Q9HCC0 563 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GPN1Q9HCN4 374 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CD209Q9NNX6 404 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM9BQ9NQ34 198 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 POLE3Q9NRF9 147 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SLC7A10Q9NS82 523 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NRBP2Q9NSY0 501 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NMRK1Q9NWW6 199 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HPF1Q9NWY4 346 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NDE1Q9NXR1 346 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NFKBIL1Q9UBC1 381 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 EPS15L1Q9UBC2 864 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MTRRQ9UBK8 725 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 FAM153AQ9UHL3 310 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 DIMT1Q9UNQ2 313 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GINS2Q9Y248 185 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ERGIC3Q9Y282 383 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IFT52Q9Y366 437 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MROH7-TTC4A0A0A0MT08 1334 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZFHX3Q15911 3703 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 DMXL2Q8TDJ6 3036 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TSC2P49815 1807 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 LOC105371242A0A075B767 164 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TRAV24A0A0B4J272 114 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SMIM31A0A1B0GVY4 71 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1W2PQ72 361 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 GSTTP1A0A1W2PQM5 241 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 FEZF1A0PJY2 475 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MTMR11A4FU01 709 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR6C74A6NCV1 312 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC160A6NGH7 325 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ACOD1A6NK06 481 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TRPC5OSA6NMA1 111 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SIGLEC16A6NMB1 481 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MIF4GDA9UHW6 222 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 H0YJX3 145 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 K7EPI3 171 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC1A7O00341 560 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HSF2BPO75031 334 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NOS1APO75052 506 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PEX11AO75192 247 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PSMD10O75832 226 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 DCTN3O75935 186 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 KRT33AO76009 404 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR7A10O76100 309 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR6B1O95007 311 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SNAP29O95721 258 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 GGPS1O95749 300 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HSPA4LO95757 839 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ASS1P00966 412 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ATP1B1P05026 303 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 S100A9P06702 114 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PLEKP08567 350 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ZSCAN5DPP0CG00 497 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 THEGLP0DJG4 465 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TPBGLP0DKB5 382 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 EEF2P13639 858 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ANXA8P13928 327 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PDGFRAP16234 1089 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms