RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RPH3AQ9Y2J0 694 aaPredicted RBP13.42□□□□□ -0.26
USP4-212ENST00000486549 PCNX1Q96RV3 2341 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 FIGNL2A6NMB9 653 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 ALG1L2C9J202 215 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 E9PLN8 166 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 SOX30O94993 753 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 NGFRP08138 427 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 BMP7P18075 431 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 LCN1P31025 176 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 MDH1P40925 334 aaKnown RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 ATP4BP51164 291 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 DSCR4P56555 118 aaPredicted RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 ADORA2A-AS1P86434 159 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 CRYZQ08257 329 aaKnown RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 C17orf67Q0P5P2 114 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 RCAN2Q14206 197 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 GPR68Q15743 365 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 DCST1Q5T197 706 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 ATAD3BQ5T9A4 648 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 MSANTD1Q6ZTZ1 278 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 FUNDC1Q8IVP5 155 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 FADS6Q8N9I5 356 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 CHDHQ8NE62 594 aaPredicted RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 MIPOL1Q8TD10 442 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 ABTB1Q969K4 478 aaPredicted RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 SH3YL1Q96HL8 342 aaPredicted RBP13.41□□□□□ -0.26
USP4-212ENST00000486549 SFXN2Q96NB2 322 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 SDF2Q99470 211 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 VKORC1Q9BQB6 163 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 UGT2B28Q9BY64 529 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 PTGES2Q9H7Z7 377 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 TRIM33Q9UPN9 1127 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 CAMK2AQ9UQM7 478 aa13.41□□□□□ -0.26
USP4-212ENST00000486549 NCOA6Q14686 2063 aaPredicted RBP13.4□□□□□ -0.26
USP4-212ENST00000486549 CYSRT1A8MQ03 144 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 CLDN1O95832 211 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 AGR2O95994 175 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 AK1P00568 194 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 HK1P19367 917 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 CAPN3P20807 821 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 ACVR2AP27037 513 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 CD226Q15762 336 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 ARHGAP11BQ3KRB8 267 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 COX20Q5RI15 118 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 RAET1LQ5VY80 246 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 CGB2Q6NT52 195 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 BLOC1S3Q6QNY0 202 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 MRGPRGQ86SM5 289 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 MARVELD2Q8N4S9 558 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 ZNF527Q8NB42 609 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 PHOSPHO1Q8TCT1 267 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 STON2Q8WXE9 905 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 SPDL1Q96EA4 605 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 AURKBQ96GD4 344 aaPredicted RBP13.4□□□□□ -0.26
USP4-212ENST00000486549 DMRTA2Q96SC8 542 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 TIMP4Q99727 224 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 HOXD1Q9GZZ0 328 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 MKLN1Q9UL63 735 aa13.4□□□□□ -0.26
USP4-212ENST00000486549 PHF3Q92576 2039 aaKnown RBP13.4□□□□□ -0.26
USP4-212ENST00000486549 A0A1W2PQD3 144 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 HMGN4O00479 90 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 FCMRO60667 390 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 WDR1O75083 606 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 TNFRSF21O75509 655 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 STX11O75558 287 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 KRT75O95678 551 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 CD1EP15812 388 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ANXA11P50995 505 aaKnown RBP13.39□□□□□ -0.27
USP4-212ENST00000486549 SMSP52788 366 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ARFIP2P53365 341 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ATP12AP54707 1039 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 HPCAP84074 193 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 FUT5Q11128 374 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ART3Q13508 389 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 GPAT3Q53EU6 434 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.39□□□□□ -0.27
USP4-212ENST00000486549 C1orf185Q5T7R7 199 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 VASNQ6EMK4 673 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 HEPHL1Q6MZM0 1159 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 XKRXQ6PP77 449 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ULK2Q8IYT8 1036 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 OR5M1Q8NGP8 315 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ZFP90Q8TF47 636 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 PHF10Q8WUB8 498 aaKnown RBP13.39□□□□□ -0.27
USP4-212ENST00000486549 ITLN2Q8WWU7 325 aaPredicted RBP13.39□□□□□ -0.27
USP4-212ENST00000486549 GTF2H4Q92759 462 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 ROPN1LQ96C74 230 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 C1GALT1C1Q96EU7 318 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 RABEP2Q9H5N1 569 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 CCDC134Q9H6E4 229 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 VDAC3Q9Y277 283 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 FAM215AQ9Y5M1 114 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 KLF2Q9Y5W3 355 aaPredicted RBP13.39□□□□□ -0.27
USP4-212ENST00000486549 ARHGAP21Q5T5U3 1957 aa13.39□□□□□ -0.27
USP4-212ENST00000486549 IGLV3-32A0A0A0MS00 114 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 CENPVL1A0A0U1RR11 272 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 SHISA8B8ZZ34 492 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 H3BNH8 94 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 HCRTR2O43614 444 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ZIC3O60481 467 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms