RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	TM9SF4	Q92544	642 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	NR4A3	Q92570	626 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	USP7	Q93009	1102 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	TRIM43	Q96BQ3	446 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	ITCH	Q96J02	903 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	FAM193B	Q96PV7	902 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	GFM1	Q96RP9	751 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	NEU1	Q99519	415 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	LGMN	Q99538	433 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	OMD	Q99983	421 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	FDXACB1	Q9BRP7	624 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	C16orf70	Q9BSU1	422 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	THAP7	Q9BT49	309 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	JAM3	Q9BX67	310 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	SEC11C	Q9BY50	192 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	POLR2J2	Q9GZM3	115 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	SPRTN	Q9H040	489 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	HDHD2	Q9H0R4	259 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	ABCG5	Q9H222	651 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR51V1	Q9H2C8	321 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	STARD7	Q9NQZ5	370 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	NANS	Q9NR45	359 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	SMCO4	Q9NRQ5	59 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	CYSLTR2	Q9NS75	346 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	MRPS18A	Q9NVS2	196 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	ASB6	Q9NWX5	421 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	TXNL4B	Q9NX01	149 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	VNN3	Q9NY84	501 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	SLCO1C1	Q9NYB5	712 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	TAS2R3	Q9NYW6	316 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	LSM2	Q9Y333	95 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	FIS1	Q9Y3D6	152 aa		4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	ZFC3H1	O60293	1989 aa	Known RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	TRIP12	Q14669	1992 aa	Predicted RBP	4.41	□□□□□ -1.7
PTCD3-212	ENST00000477520	CEP290	O15078	2479 aa		4.4	□□□□□ -1.7
PTCD3-212	ENST00000477520	HTT	P42858	3142 aa		4.4	□□□□□ -1.7
PTCD3-212	ENST00000477520	FRMPD3	Q5JV73	1810 aa		4.4	□□□□□ -1.7
PTCD3-212	ENST00000477520	PCM1	Q15154	2024 aa		4.4	□□□□□ -1.7
PTCD3-212	ENST00000477520	TRBV5-3	A0A0A0MS03	114 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520		A0A1W2PRB8	838 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	TMEM129	A0AVI4	362 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	C17orf102	A2RUQ5	167 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR6C74	A6NCV1	312 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RFPL4A	A6NLU0	287 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	TMEM210	A6NLX4	147 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PRR23D1	E9PI22	279 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RFPL4AL1	F8VTS6	287 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	TSTD3	H0UI37	97 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520		H7C1Q1	480 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	HAS3	O00219	553 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	WWP2	O00308	870 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	UBFD1	O14562	309 aa	Known RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	GABRD	O14764	452 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SCAMP3	O14828	347 aa	Known RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	B4GALT5	O43286	388 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RGS14	O43566	566 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	GSTZ1	O43708	216 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SSNA1	O43805	119 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	KLK8	O60259	260 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	CDC14B	O60729	498 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	GALR3	O60755	368 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	KERA	O60938	352 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	ENTPD6	O75354	484 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	ATP6AP2	O75787	350 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SIX3	O95343	332 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	F10	P00742	488 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	CFD	P00746	253 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	MT-ND4L	P03901	98 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	HIST1H2AB	P04908	130 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	TH	P07101	528 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	LINC00614	P0C842	121 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	GKN3P	P0CG01	181 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	ZNF286B	P0CG31	522 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SMIM10L2A	P0DMW4	78 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SMIM10L2B	P0DMW5	78 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PRPS2	P11908	318 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RNH1	P13489	461 aa	Known RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RPA2	P15927	270 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	S1PR1	P21453	382 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	CNR1	P21554	472 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	C5AR1	P21730	350 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	APEX1	P27695	318 aa	Known RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	CRABP1	P29762	137 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	HOXC12	P31275	282 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	KDELR2	P33947	212 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PCP4	P48539	62 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PITPNB	P48739	271 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	RGS4	P49798	205 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	GZMM	P51124	257 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	MMP15	P51511	669 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	HCCS	P53701	268 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	DLX5	P56178	289 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	HSD17B7	P56937	341 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	C21orf58	P58505	322 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	ACTR1A	P61163	376 aa		4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	SEC61A1	P61619	476 aa	Known RBP	4.4	□□□□□ -1.71
PTCD3-212	ENST00000477520	PKIA	P61925	76 aa		4.4	□□□□□ -1.71

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