RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 POLE3Q9NRF9 147 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 UBQLN4Q9NRR5 601 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 THUMPD1Q9NXG2 353 aaKnown RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 TAS2R1Q9NYW7 299 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 NTNG1Q9Y2I2 539 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 KLF13Q9Y2Y9 288 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 L3MBTL1Q9Y468 752 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PCDHGB6Q9Y5F9 930 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PCNX3Q9H6A9 2034 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PRRC2CQ9Y520 2896 aaKnown RBP13.51□□□□□ -0.25
COL9A3-209ENST00000469852 SPTA1P02549 2419 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ANKRD33BA6NCL7 494 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 CLDN24A6NM45 220 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 FAM220BPB1ANY3 271 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ALG1L2C9J202 215 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 GNB5O14775 395 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 OIP5O43482 229 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 TRIM3O75382 744 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-209ENST00000469852 WISP2O76076 250 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 PGM3O95394 542 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 NGFRP08138 427 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 GUSBP08236 651 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 AQP1P29972 269 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 LCN1P31025 176 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 CRISP3P54108 245 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 KCNJ2P63252 427 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 RPP38P78345 283 aaKnown RBP13.51□□□□□ -0.25
COL9A3-209ENST00000469852 NFATC3Q12968 1075 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ZNF141Q15928 474 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ZNF630Q2M218 657 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-209ENST00000469852 VMACQ2NL98 169 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 NDUFAF6Q330K2 333 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 KLHL26Q53HC5 615 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 OR5M10Q6IEU7 315 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 IFNEQ86WN2 208 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ZNF614Q8N883 585 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 FRMD6Q96NE9 622 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 FAM173AQ9BQD7 235 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 DOHHQ9BU89 302 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 SPAG4Q9NPE6 437 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ADA2Q9NZK5 511 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 ABCG2Q9UNQ0 655 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 WIF1Q9Y5W5 379 aa13.51□□□□□ -0.25
COL9A3-209ENST00000469852 PRORSD1PA6NEY8 169 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 AGAP5A6NIR3 686 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 C5orf58C9J3I9 102 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 ANGPTL1O95841 491 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 RFPL3SP0C7P2 107 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 RPS4Y1P22090 263 aaKnown RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 PCGF2P35227 344 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 MNAT1P51948 309 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 CRYBA2P53672 197 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 PCBP3P57721 371 aaKnown RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 RBBP4Q09028 425 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 SNTA1Q13424 505 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 CEACAM7Q14002 265 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 REEP3Q6NUK4 255 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 SLC30A6Q6NXT4 461 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 C16orf89Q6UX73 402 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 VRK2Q86Y07 508 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 WDSUB1Q8N9V3 476 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 ZFP62Q8NB50 900 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 C11orf65Q8NCR3 313 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 FAM156AQ8NDB6 213 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 HIPK4Q8NE63 616 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 OR2T12Q8NG77 320 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 BBS10Q8TAM1 723 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 ARSGQ96EG1 525 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 REXO5Q96IC2 774 aaKnown RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 JSRP1Q96MG2 331 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 CDRT15Q96T59 188 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 TBL1XR1Q9BZK7 514 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 ALG2Q9H553 416 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 BCL2L10Q9HD36 194 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 DTNAQ9Y4J8 743 aa13.5□□□□□ -0.25
COL9A3-209ENST00000469852 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.5□□□□□ -0.25
COL9A3-209ENST00000469852 A0A0G2JPF8 293 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 A0A1W2PQD3 144 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 TMEM247A6NEH6 219 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 FAM166BA8MTA8 275 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 HNRNPCL2B2RXH8 293 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 HNRNPCL3B7ZW38 293 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 KLRC4-KLRK1H3BQV0 150 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 SCDO00767 359 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 SNPHO15079 494 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 GMFGO60234 142 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 HNRNPCL1O60812 293 aaKnown RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 GLSO94925 669 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 RASAL1O95294 804 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 HNRNPCL4P0DMR1 293 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 MSX2P35548 267 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 EEFSECP57772 596 aaKnown RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 TBCELQ5QJ74 424 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 PRAMEF8Q5VWM4 474 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 PRAMEF7Q5VXH5 474 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 RPUSD3Q6P087 351 aaKnown RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 COMTD1Q86VU5 262 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 LSRQ86X29 649 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-209ENST00000469852 MICU2Q8IYU8 434 aa13.49□□□□□ -0.25
COL9A3-209ENST00000469852 METTL25Q8N6Q8 603 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms