RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SZRD1Q7Z422 152 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 R3HCC1LQ7Z5L2 792 aaKnown RBP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 TRABD2AQ86V40 505 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 DDIASQ8IXT1 998 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 BANPQ8N9N5 519 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 SLC16A11Q8NCK7 471 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 OR4C3Q8NH37 302 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 OR2W6PQ8NHA6 318 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 TWIST2Q8WVJ9 160 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 FAM111AQ96PZ2 611 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 OPN3Q9H1Y3 402 aaPredicted RBP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 ELOVL5Q9NYP7 299 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 STOML1Q9UBI4 398 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 TRAF6Q9Y4K3 522 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 A0A087WZY1 265 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 TMEM233B4DJY2 109 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 SHISA8B8ZZ34 492 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 PIP5K1BO14986 540 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 CTIFO43310 598 aaKnown RBP14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 GMFGO60234 142 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 KCNK2O95069 426 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 CGAP01215 116 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 ALOX5P09917 674 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 CD8BP10966 210 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 FCGR2AP12318 317 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 MLC1Q15049 377 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 GUSBP1Q15486 140 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 SGCBQ16585 318 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 DUSP5Q16690 384 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 ARL13AQ5H913 290 aaPredicted RBP14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 EXOSC6Q5RKV6 272 aaKnown RBP14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 FIGNL1Q6PIW4 674 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 GALNT10Q86SR1 603 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 GGNQ86UU5 652 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 FBXO30Q8TB52 745 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 WFIKKN1Q96NZ8 548 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 SLC39A3Q9BRY0 314 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 EML4Q9HC35 981 aaKnown RBP14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 ATP6V1HQ9UI12 483 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 VDAC3Q9Y277 283 aa14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF469Q96JG9 3925 aaPredicted RBP14.9□□□□□ -0.02
CCDC28B-204ENST00000469003 TMEM114B3SHH9 223 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 SCAMP2O15127 329 aaKnown RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 NUDT17P0C025 328 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 POU2F1P14859 743 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 CD53P19397 219 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 EFNA1P20827 205 aaPredicted RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 MAPK1P28482 360 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 HPCAL1P37235 193 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 RPL3P39023 403 aaKnown RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 SERPINB4P48594 390 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 PRIM2P49643 509 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 ZAR1Q86SH2 424 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 MISPQ8IVT2 679 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 GTPBP8Q8N3Z3 284 aaPredicted RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 COX18Q8N8Q8 333 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 GATSQ8NAP1 163 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 ACTRT2Q8TDY3 377 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 FAM120BQ96EK7 910 aaKnown RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 C16orf58Q96GQ5 468 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 PPP3R2Q96LZ3 170 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 MECRQ9BV79 373 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 ANKZF1Q9H8Y5 726 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 DLL4Q9NR61 685 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 UBQLN4Q9NRR5 601 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 SIRT3Q9NTG7 399 aaPredicted RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 BEX4Q9NWD9 120 aaPredicted RBP14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 ZNF226Q9NYT6 803 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 SLC17A7Q9P2U7 560 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 LGALS13Q9UHV8 139 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 PROCRQ9UNN8 238 aa14.89□□□□□ -0.03
CCDC28B-204ENST00000469003 A0A1W2PQD3 144 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 C7orf72A4D263 438 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 DEFB108AA8MXU0 73 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 EIF1AYO14602 144 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 AQP8O94778 261 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 HSPA4LO95757 839 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 FOSL1P15407 271 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 HPGDP15428 266 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 CRYGSP22914 178 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 CCKARP32238 428 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 UGT2B10P36537 528 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 POU6F2P78424 691 aaPredicted RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 XKR7Q5GH72 579 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 FAM214BQ7L5A3 538 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 WDR75Q8IWA0 830 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 ZNF610Q8N9Z0 462 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 OR7A2PQ8NGA2 310 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 ZBTB8AQ96BR9 441 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 STACQ99469 402 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 MED18Q9BUE0 208 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 BTBD2Q9BX70 525 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 NEUROD4Q9HD90 331 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 DUSP22Q9NRW4 184 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 ZCCHC3Q9NUD5 404 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 FBXO34Q9NWN3 711 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 PAQR5Q9NXK6 330 aaPredicted RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 KLHL28Q9NXS3 571 aa14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 C6orf203Q9P0P8 240 aaPredicted RBP14.88□□□□□ -0.03
CCDC28B-204ENST00000469003 A0A1W2PRB8 838 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms