RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 EIPR1Q53HC9 387 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 MRPL2Q5T653 305 aaKnown RBP16.93■□□□□ 0.3
COL9A3-205ENST00000466192 RRM2BQ7LG56 351 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 PRSS42Q7Z5A4 293 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 BCDIN3DQ7Z5W3 292 aaKnown RBP16.93■□□□□ 0.3
COL9A3-205ENST00000466192 LSRQ86X29 649 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-205ENST00000466192 NKAIN4Q8IVV8 208 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 NDNFQ8TB73 568 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 PIGKQ92643 395 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 RPL3LQ92901 407 aaKnown RBP16.93■□□□□ 0.3
COL9A3-205ENST00000466192 CNPPD1Q9BV87 410 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 WDFY4Q6ZS81 3184 aa16.93■□□□□ 0.3
COL9A3-205ENST00000466192 hCG_2014768A0A024R1R8 64 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 M0R082 166 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 LAMTOR5O43504 91 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 PRG2P13727 222 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 RFX3P48380 749 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 GIPRP48546 466 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 PGDP52209 483 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 MLLT10P55197 1068 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 NCS1P62166 190 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 CSTF1Q05048 431 aaKnown RBP16.92■□□□□ 0.3
COL9A3-205ENST00000466192 SIGLEC14Q08ET2 396 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 SAP25Q8TEE9 199 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 EGLN3Q9H6Z9 239 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 ERVK-19Q9WJR5 959 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 ASCC3Q8N3C0 2202 aaKnown RBP16.92■□□□□ 0.3
COL9A3-205ENST00000466192 CDHR4A6H8M9 788 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 SLC22A1O15245 554 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 CLPXO76031 633 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 IGKV1D-16P01601 117 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 GINS1Q14691 196 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 HLA-BQ31612 363 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 ACSM5Q6NUN0 579 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 NPSR1Q6W5P4 371 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 TMPRSS9Q7Z410 1059 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 GDF7Q7Z4P5 450 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 KIF18BQ86Y91 864 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 OR8J1Q8NGP2 316 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 TRUB1Q8WWH5 349 aaKnown RBP16.92■□□□□ 0.3
COL9A3-205ENST00000466192 SLC41A3Q96GZ6 507 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 FAM46AQ96IP4 442 aaKnown RBP16.92■□□□□ 0.3
COL9A3-205ENST00000466192 BCL7BQ9BQE9 202 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 YIPF2Q9BWQ6 316 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 PLA2G12AQ9BZM1 189 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 ANKRD19PQ9H560 264 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 CNOT2Q9NZN8 540 aaKnown RBP16.92■□□□□ 0.3
COL9A3-205ENST00000466192 SUSD2Q9UGT4 822 aa16.92■□□□□ 0.3
COL9A3-205ENST00000466192 LY6G6EA0A0G2JKS1 128 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 TLX2O43763 284 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PRKYO43930 277 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 ATP6V1G1O75348 118 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 IFNA16P05015 189 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 GKN3PP0CG01 181 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PTNP21246 168 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 GSTM3P21266 225 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 IFNGR2P38484 337 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PLAURQ03405 335 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 FUT7Q11130 342 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 ZNHIT3Q15649 155 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-205ENST00000466192 GUSBP11Q6P575 273 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 C11orf74Q86VG3 221 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 MVB12AQ96EY5 273 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 Q96MT0 163 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PTCHD1Q96NR3 888 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 DUSP23Q9BVJ7 150 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 ARMC7Q9H6L4 198 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 SLC25A19Q9HC21 320 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 POLE3Q9NRF9 147 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 ATXN7L1Q9ULK2 861 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-205ENST00000466192 U3KQA8 63 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 M0R3G1 203 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PRAMEF2O60811 474 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 OR5F1O95221 314 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 HSMCR30P0CW71 290 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 TGFBR1P36897 503 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 SLC15A1P46059 708 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 FLYWCH1Q4VC44 716 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PLAG1Q6DJT9 500 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 ZNF574Q6ZN55 896 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-205ENST00000466192 KMT5CQ86Y97 462 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 GPR135Q8IZ08 494 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 CACTIN-AS1Q8N1I8 211 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 OR4C6Q8NH72 309 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 C16orf52Q8NHV5 167 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 GNPDA2Q8TDQ7 276 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 PMM1Q92871 262 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 OR10A5Q9H207 317 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 DSN1Q9H410 356 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 SLC7A7Q9UM01 511 aa16.91■□□□□ 0.3
COL9A3-205ENST00000466192 CPED1A4D0V7 1026 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 SOX30O94993 753 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 CLPSP04118 112 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 MSL3P1P0C860 447 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 HTR2AP28223 471 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 CDK5Q00535 292 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 SERTAD2Q14140 314 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 IRF3Q14653 427 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 TMEM201Q5SNT2 666 aa16.9■□□□□ 0.3
COL9A3-205ENST00000466192 PERM1Q5SV97 790 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms