RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HTR4Q13639 388 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 DCST2Q5T1A1 773 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 MRPL2Q5T653 305 aaKnown RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 FIGNL1Q6PIW4 674 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 PFN4Q8NHR9 129 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZFPM2Q8WW38 1151 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 UFD1Q92890 307 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 RERGQ96A58 199 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 TXNDC15Q96J42 360 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 KCTD7Q96MP8 289 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 DCLRE1CQ96SD1 692 aaKnown RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF649Q9BS31 505 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 DPH1Q9BZG8 443 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ENKD1Q9H0I2 346 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 MIXL1Q9H2W2 232 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CACYBPQ9HB71 228 aaKnown RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ATP13A2Q9NQ11 1180 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 HINT3Q9NQE9 182 aaKnown RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 C20orf141Q9NUB4 165 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CPNE7Q9UBL6 633 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CBLCQ9ULV8 474 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 PIAS3Q9Y6X2 628 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 MN1Q10571 1320 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SPTBP11277 2137 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 LINC00854A0A1B0GVQ3 168 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CYR61O00622 381 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SLC30A4O14863 429 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 STX11O75558 287 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 APOA1P02647 267 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CT62P0C5K7 136 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 GCGRP47871 477 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 FXYD6P3P58550 94 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF155Q12901 538 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ADAM15Q13444 863 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 KRR1Q13601 381 aaKnown RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 INSL4Q14641 139 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF791Q3KP31 576 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 QSOX2Q6ZRP7 698 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF438Q7Z4V0 828 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 NRARPQ7Z6K4 114 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CPOQ8IVL8 374 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SLC22A18ASQ8N1D0 253 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF619Q8N2I2 560 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 PIAS4Q8N2W9 510 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CAMKK1Q8N5S9 505 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 IL17RDQ8NFM7 739 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 OR2T33Q8NG76 320 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 OR13H1Q8NG92 308 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 BAHD1Q8TBE0 780 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 RFKQ969G6 155 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SLC35B4Q969S0 331 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 WDFY2Q96P53 400 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 NEDD4LQ96PU5 975 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 KATNB1Q9BVA0 655 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SRRQ9GZT4 340 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 UBQLN3Q9H347 655 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 IL21RQ9HBE5 538 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CAPN10Q9HC96 672 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 HRASLS2Q9NWW9 162 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CLCA2Q9UQC9 943 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CDH10Q9Y6N8 788 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 TCRBV21S2A2A0A5A6 115 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ZC3H12DA2A288 527 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SLC35F4A4IF30 521 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 A8MU76 341 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ATP1B1P05026 303 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 CTSBP07858 339 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 THBS1P07996 1170 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MAKP20794 623 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF10P21506 573 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 GABRA5P31644 462 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ATP6V1E1P36543 226 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SLC9A3P48764 834 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ILF3Q12906 894 aaKnown RBP eCLIP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 OR1Q1Q15612 314 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 PRICKLE4Q2TBC4 344 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SLC35F1Q5T1Q4 408 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 NXNL2Q5VZ03 156 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SMARCD3Q6STE5 483 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 AKAP14Q86UN6 197 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 RANBP3LQ86VV4 465 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SIRT6Q8N6T7 355 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 CLDN22Q8N7P3 220 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 COX18Q8N8Q8 333 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 NACC2Q96BF6 587 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MSLNLQ96KJ4 702 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SECISBP2Q96T21 854 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 TMED9Q9BVK6 235 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 TEX12Q9BXU0 123 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 HDHD5Q9BXW7 423 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 OR52D1Q9H346 318 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MED20Q9H944 212 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 TBC1D17Q9HA65 648 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 LYRM4Q9HD34 91 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ISYNA1Q9NPH2 558 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 WDR70Q9NW82 654 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 LRP4O75096 1905 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 VCANP13611 3396 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 GXYLT2A0PJZ3 443 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 TRAPPC13A5PLN9 417 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms