RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TMEM239Q8WW34 195 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 PATE1Q8WXA2 126 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 OR1E3Q8WZA6 343 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 RIT1Q92963 219 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 UCN3Q969E3 161 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 HSPA12BQ96MM6 686 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SERINC2Q96SA4 455 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 OR52D1Q9H346 318 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 TCF7L1Q9HCS4 588 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 PCDHGB1Q9Y5G3 927 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 RANBP2P49792 3224 aaKnown RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 A0A087WUU8 490 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 A0A1W2PQ09 198 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 H0YGG7 62 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 CSO75390 466 aaKnown RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 MOSPD3O75425 235 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 PPP1R3DO95685 299 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 RLN1P04808 185 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 PDX1P52945 283 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ARF3P61204 181 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ERV3-1Q14264 604 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SEC23BQ15437 767 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SLC48A1Q6P1K1 146 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ZNF676Q8N7Q3 588 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 CDRT4Q8N9R6 151 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 OR5M3Q8NGP4 307 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 YIPF6Q96EC8 236 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 TGM7Q96PF1 710 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SLAMF7Q9NQ25 335 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 NFKBIL1Q9UBC1 381 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 DOCK4Q8N1I0 1966 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TRAV27A0A087WT01 109 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 FAM171A2A8MVW0 826 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 SCDO00767 359 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 NRG2O14511 850 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 RNH1P13489 461 aaKnown RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 MAP2K3P46734 347 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 RHAGQ02094 409 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 RAB40BQ12829 278 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TBC1D25Q3MII6 688 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 SLC16A12Q6ZSM3 486 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PRICKLE2Q7Z3G6 844 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 NRARPQ7Z6K4 114 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 NKAIN4Q8IVV8 208 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 C1orf216Q8TAB5 229 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TMEM163Q8TC26 289 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 RSPRY1Q96DX4 576 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 ADAD1Q96M93 576 aaKnown RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PITX2Q99697 317 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TBL1XR1Q9BZK7 514 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 OTOL1A6NHN0 477 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 ZAR1LA6NP61 321 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PSMD9O00233 223 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 RPS19P39019 145 aaKnown RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 OR12D2P58182 307 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PPP3R1P63098 170 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TSPAN31Q12999 210 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 MLLT11Q13015 90 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 KIR2DS3Q14952 304 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 DHRS4L2Q6PKH6 230 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 OR8K3Q8NH51 312 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 MOSPD2Q8NHP6 518 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CREB3L4Q8TEY5 395 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 ZMYND19Q96E35 227 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 HS6ST2Q96MM7 605 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 ALG8Q9BVK2 526 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 SRA1Q9HD15 236 aaKnown RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PCDHGB7Q9Y5F8 929 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 MAU2Q9Y6X3 613 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 SLC22A31A6NKX4 558 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CHRM4P08173 479 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CPMP14384 443 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 S100A1P23297 94 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PTPN6P29350 595 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 FNTBP49356 437 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 DECR1Q16698 335 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 DCST2Q5T1A1 773 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 MRPL2Q5T653 305 aaKnown RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 USP53Q70EK8 1073 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CADM3Q8N126 398 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 VWA5B2Q8N398 1253 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 TOMM5Q8N4H5 51 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 FRMD1Q8N878 549 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 OR9A4Q8NGU2 314 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CNRIP1Q96F85 164 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 LINC00615Q96LM1 132 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 ZNF582Q96NG8 517 aaPredicted RBP10.88□□□□□ -0.67
NPHP4-204ENST00000460696 DOK1Q99704 481 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CCDC32Q9BV29 185 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 CPNE7Q9UBL6 633 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 PCDHGA4Q9Y5G9 962 aa10.88□□□□□ -0.67
NPHP4-204ENST00000460696 EEF1E1O43324 174 aaKnown RBP10.87□□□□□ -0.67
NPHP4-204ENST00000460696 ARL6IP5O75915 188 aa10.87□□□□□ -0.67
NPHP4-204ENST00000460696 NCR1O76036 304 aa10.87□□□□□ -0.67
NPHP4-204ENST00000460696 PKLRP30613 574 aa10.87□□□□□ -0.67
NPHP4-204ENST00000460696 GZMMP51124 257 aa10.87□□□□□ -0.67
NPHP4-204ENST00000460696 RPS25P62851 125 aaKnown RBP10.87□□□□□ -0.67
NPHP4-204ENST00000460696 GBX1Q14549 363 aa10.87□□□□□ -0.67
NPHP4-204ENST00000460696 NFATC4Q14934 902 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms