RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CTAGE3PQ8IX95 158 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RBFAQ8N0V3 343 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PUSL1Q8N0Z8 303 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PARP8Q8N3A8 854 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MFSD9Q8NBP5 474 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CSNK2A3Q8NEV1 391 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ABHD11Q8NFV4 315 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OR4M2Q8NGB6 313 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ASB5Q8WWX0 329 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 LPAR1Q92633 364 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RIT1Q92963 219 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC38A4Q969I6 547 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM46BQ96A09 425 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SPSB1Q96BD6 273 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CERS2Q96G23 380 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC41A3Q96GZ6 507 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SENP5Q96HI0 755 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PWWP2AQ96N64 755 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC22A12Q96S37 553 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KLF6Q99612 283 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ECSITQ9BQ95 431 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC30A2Q9BRI3 323 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 UTP23Q9BRU9 249 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MED10Q9BTT4 135 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM109Q9BVC6 243 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 C1QTNF1Q9BXJ1 281 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NEUROG2Q9H2A3 272 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ANKRA2Q9H9E1 313 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 EQTNQ9NQ60 294 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 YAE1D1Q9NRH1 226 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MRPL22Q9NWU5 206 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF224Q9NZL3 707 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NPAP1Q9NZP6 1156 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 GSKIPQ9P0R6 139 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MARCH4Q9P2E8 410 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ANKFY1Q9P2R3 1169 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DNMT3BQ9UBC3 853 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KLQ9UEF7 1012 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF221Q9UK13 617 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PLA2G4CQ9UP65 541 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PPP1R3CQ9UQK1 317 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MEIOCA2RUB1 952 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MAGEB17A8MXT2 336 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 K7EP13 123 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SSX4O60224 188 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PLIN3O60664 434 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ENTPD5O75356 428 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SPAG7O75391 227 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RBMXL2O75526 392 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 WBP4O75554 376 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OR2C1O95371 312 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TTLL1O95922 423 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PAK4O96013 591 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 HGFP14210 728 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PAX6P26367 422 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MGAT1P26572 445 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ACADLP28330 430 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 AKT2P31751 481 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OTX1P32242 354 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 P2RY2P41231 377 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SRP9P49458 86 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MAZP56270 477 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PTENP60484 403 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 IL5RAQ01344 420 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OGDHQ02218 1023 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CKAP4Q07065 602 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 BNIP2Q12982 314 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KRR1Q13601 381 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CAMK1Q14012 370 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SHHQ15465 462 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DLG2Q15700 870 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NTRK2Q16620 822 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZXDCQ2QGD7 858 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM249Q2WGJ8 235 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 HSD17B12Q53GQ0 312 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PABPC1L2AQ5JQF8 200 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 C9orf50Q5SZB4 431 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 C9orf64Q5T6V5 341 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT2A3Q6UWM9 527 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CENPUQ71F23 418 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 LARP4Q71RC2 724 aaKnown RBP eCLIP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TECPR1Q7Z6L1 1165 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ALYREFQ86V81 257 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF276Q8N554 614 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DNERQ8NFT8 737 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SEMA6DQ8NFY4 1073 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OR56B1Q8NGI3 324 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OR11L1Q8NGX0 322 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC22A17Q8WUG5 538 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ARRDC3Q96B67 414 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 SAT2Q96F10 170 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF512Q96ME7 567 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 WFIKKN1Q96NZ8 548 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ALKBH3Q96Q83 286 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 VAT1Q99536 393 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TSSK1BQ9BXA7 367 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KATNBL1Q9H079 304 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF552Q9H707 407 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF160Q9HCG1 818 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms