RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TNFRSF21O75509 655 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 G6PDP11413 515 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 POU3F2P20265 443 aaPredicted RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 TCEA1P23193 301 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 CCT3P49368 545 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 SUCLG1P53597 346 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 CLDN8P56748 225 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 EEFSECP57772 596 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 CEP85LQ5SZL2 805 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 RAET1LQ5VY80 246 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 CDC73Q6P1J9 531 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 FIGNL1Q6PIW4 674 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 PLXDC2Q6UX71 529 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 SZRD1Q7Z422 152 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 GRAMD2AQ8IUY3 354 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 ZZZ3Q8IYH5 903 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 MEIOBQ8N635 442 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 ZNF781Q8N8C0 355 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 FBXO30Q8TB52 745 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 INTS12Q96CB8 462 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 SORT1Q99523 831 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 BHLHE41Q9C0J9 482 aaPredicted RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 PIGMQ9H3S5 423 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 CXorf36Q9H7Y0 433 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 NOP53Q9NZM5 478 aaKnown RBP17.5■□□□□ 0.39
USP40-207ENST00000450940 AP4B1Q9Y6B7 739 aa17.5■□□□□ 0.39
USP40-207ENST00000450940 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 A0A1W2PQD3 144 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 NDUFB5O43674 189 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 TNFSF13O75888 250 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 MYZAPP0CAP1 466 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 POU6F2P78424 691 aaPredicted RBP17.49■□□□□ 0.39
USP40-207ENST00000450940 LASP1Q14847 261 aaKnown RBP17.49■□□□□ 0.39
USP40-207ENST00000450940 GALNT10Q86SR1 603 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 TMEM200AQ86VY9 491 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 KIRREL3Q8IZU9 778 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 COX18Q8N8Q8 333 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 OR56A1Q8NGH5 318 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 SFXN5Q8TD22 340 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 ACTRT2Q8TDY3 377 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 YIPF4Q9BSR8 244 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 ACTRT3Q9BYD9 372 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 RASSF1Q9NS23 344 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 GPATCH2Q9NW75 528 aa17.49■□□□□ 0.39
USP40-207ENST00000450940 DNAJB12Q9NXW2 375 aaKnown RBP17.49■□□□□ 0.39
USP40-207ENST00000450940 F8P00451 2351 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 A0A087WZY1 265 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 A0A1W2PNV4 684 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 C7orf72A4D263 438 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 EEF1E1-BLOC1S5C9J1V9 151 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 EEF1E1O43324 174 aaKnown RBP17.48■□□□□ 0.39
USP40-207ENST00000450940 C6orf47O95873 294 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 ZNF17P17021 662 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 SLC1A6P48664 564 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 PCYT1AP49585 367 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 RPL14P50914 215 aaKnown RBP17.48■□□□□ 0.39
USP40-207ENST00000450940 OR2A2Q6IF42 318 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 CHMP1BQ7LBR1 199 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 MISPQ8IVT2 679 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 UBQLNLQ8IYU4 475 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 LRRC34Q8IZ02 419 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 OR5M1Q8NGP8 315 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 CDS1Q92903 461 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 MOAP1Q96BY2 351 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 DUSP26Q9BV47 211 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 AKTIPQ9H8T0 292 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 NEUROD4Q9HD90 331 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 ZNF175Q9Y473 711 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 SNX8Q9Y5X2 465 aa17.48■□□□□ 0.39
USP40-207ENST00000450940 TUBAL3A6NHL2 446 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 SLC22A20A6NK97 555 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 A6NNC1 897 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 A8MXE2 369 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 H0YC42 278 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 KRT16P08779 473 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 EPXP11678 715 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 TPD52P55327 224 aaPredicted RBP17.47■□□□□ 0.39
USP40-207ENST00000450940 CLDN20P56880 219 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 PDCD2Q16342 344 aaPredicted RBP17.47■□□□□ 0.39
USP40-207ENST00000450940 CCNJQ5T5M9 372 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 SPNS3Q6ZMD2 512 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 GCNT2Q8N0V5 402 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 GTPBP8Q8N3Z3 284 aaPredicted RBP17.47■□□□□ 0.39
USP40-207ENST00000450940 METTL25Q8N6Q8 603 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 JADE3Q92613 823 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 OTUB1Q96FW1 271 aaPredicted RBP17.47■□□□□ 0.39
USP40-207ENST00000450940 RBM24Q9BX46 236 aaKnown RBP17.47■□□□□ 0.39
USP40-207ENST00000450940 HOXD1Q9GZZ0 328 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 ITGB1BP2Q9UKP3 347 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 PACSIN3Q9UKS6 424 aa17.47■□□□□ 0.39
USP40-207ENST00000450940 AKAP6Q13023 2319 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 H3BML4 177 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 MSTNO14793 375 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 BGNP21810 368 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 PSMA4P25789 261 aaKnown RBP17.46■□□□□ 0.39
USP40-207ENST00000450940 DNAJA1P31689 397 aaKnown RBP17.46■□□□□ 0.39
USP40-207ENST00000450940 HBA1P69905 142 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 STX3Q13277 289 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 TP53BP2Q13625 1128 aa17.46■□□□□ 0.39
USP40-207ENST00000450940 GGNQ86UU5 652 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms