RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 CELSR2Q9HCU4 2923 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 NBPF19A0A087WUL8 3843 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 E9PBE3 544 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 SOX30O94993 753 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 IL2RAP01589 272 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 KRT16P08779 473 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 ZNF708P17019 499 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 MATN1P21941 496 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 IL12AP29459 219 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 S100A3P33764 101 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 DGKQP52824 942 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 CLNS1AP54105 237 aaKnown RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 RPS26P62854 115 aaKnown RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 RCAN2Q14206 197 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 BCL2A1Q16548 175 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 DPY19L1Q2PZI1 675 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 FAM174BQ3ZCQ3 159 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 GLYR1Q49A26 553 aaPredicted RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 SLC9B1Q4ZJI4 515 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 DCST2Q5T1A1 773 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 NXNQ6DKJ4 435 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 BHLHB9Q6PI77 547 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 POMZP3Q6PJE2 187 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 ARSKQ6UWY0 536 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 MEX3BQ6ZN04 569 aaKnown RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 GATSQ8NAP1 163 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 VPS37AQ8NEZ2 397 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 OR5D16Q8NGK9 328 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 OR4A15Q8NGL6 344 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 OR5M1Q8NGP8 315 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 PIWIL2Q8TC59 973 aaKnown RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 C1GALT1C1Q96EU7 318 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 MAELQ96JY0 434 aaKnown RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 SH3GL2Q99962 352 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 TREX2Q9BQ50 279 aaPredicted RBP11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 SERHL2Q9H4I8 314 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 ZNF337Q9Y3M9 751 aa11.53□□□□□ -0.56
PRPF40A-203ENST00000448428 NPIPA5A0A0B4J1W7 369 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 RNF103-CHMP3A0A140T963 221 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 A0A1W2PQD3 144 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 OR2M5A3KFT3 312 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 MBD3L4A6NDZ8 208 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 MBD3L3A6NE82 208 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 MBD3L5A6NJ08 208 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 C9JVG2 144 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 NPIPA7E9PJI5 369 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 H0Y3Z8 333 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 SCDO00767 359 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 NPIPA8P0DM63 369 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 HPGDP15428 266 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 IGFBP2P18065 325 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 ATP6V1C1P21283 382 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 UQCRC2P22695 453 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 MSX1P28360 303 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 ZNF136P52737 540 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 SUCLG1P53597 346 aaKnown RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 CASP9P55211 416 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 CLDN15P56746 228 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 GANABQ14697 944 aaKnown RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 CD226Q15762 336 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 TMEM44Q2T9K0 475 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 SLC25A35Q3KQZ1 300 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 RAET1LQ5VY80 246 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 PLXDC2Q6UX71 529 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 ADGRE4PQ86SQ3 457 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 C9orf106Q8NAJ2 232 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 RELL2Q8NC24 303 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 MBD3L2Q8NHZ7 208 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 ACTRT2Q8TDY3 377 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 OR52B2Q96RD2 323 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 UCN2Q96RP3 112 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 SDF2Q99470 211 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 TRIM8Q9BZR9 551 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 HOXD1Q9GZZ0 328 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 VIPAS39Q9H9C1 493 aa11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 ZNF629Q9UEG4 869 aaPredicted RBP11.52□□□□□ -0.57
PRPF40A-203ENST00000448428 NAV2Q8IVL1 2488 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 DUXAA6NLW8 204 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 CLCA1A8K7I4 914 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 SHISA8B8ZZ34 492 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 NPIPB9F8W1W9 429 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 LINC01387J3KSC0 135 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 C1QCP02747 245 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 PEPDP12955 493 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 BMP5P22003 454 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 RNF144AP50876 292 aaPredicted RBP11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 DLX5P56178 289 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 KLHL26Q53HC5 615 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 DMRTC2Q8IXT2 367 aaPredicted RBP11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 UBQLNLQ8IYU4 475 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 CHDHQ8NE62 594 aaPredicted RBP11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 GOT1L1Q8NHS2 421 aaPredicted RBP11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 MIPOL1Q8TD10 442 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 WNT2BQ93097 391 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 SH3YL1Q96HL8 342 aaPredicted RBP11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 SLC35G5Q96KT7 338 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 MARK4Q96L34 752 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 C7orf26Q96N11 449 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 CCDC115Q96NT0 180 aa11.51□□□□□ -0.57
PRPF40A-203ENST00000448428 OR52E6Q96RD3 313 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms