RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 CDX2Q99626 313 aaPredicted RBP13.21□□□□□ -0.29
LIMD1-202ENST00000440097 COQ7Q99807 217 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 DHRS9Q9BPW9 319 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 FNDC11Q9BVV2 318 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 CDCA4Q9BXL8 241 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 RBCK1Q9BYM8 510 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 FAM60AQ9NP50 221 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 ADAP2Q9NPF8 381 aa13.21□□□□□ -0.29
LIMD1-202ENST00000440097 LRP4O75096 1905 aa13.21□□□□□ -0.3
LIMD1-202ENST00000440097 A0A1W2PQ72 361 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SGK494L7N484 410 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HCRTR1O43613 425 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 UBXN7O94888 489 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ALPPP05187 535 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 FOSL2P15408 326 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 NT5EP21589 574 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CD27P26842 260 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 RORCP51449 518 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 FUT5Q11128 374 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 LEXMQ3ZCV2 418 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ZNF311Q5JNZ3 666 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 FAM131AQ6UXB0 335 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 FAM92BQ6ZTR7 304 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 DEFB123Q8N688 67 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 YIPF7Q8N8F6 280 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 AVL9Q8NBF6 648 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SLC16A11Q8NCK7 471 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HSPA12BQ96MM6 686 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ACTRT3Q9BYD9 372 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HHATLQ9HCP6 504 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SLC22A7Q9Y694 548 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 TMEM265A0A087WTH1 108 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SLC9B1P1A6NJY1 282 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 H3BN98 237 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 MEN1O00255 615 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SOX14O95416 240 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 WNT1P04628 370 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CCNYL3P0C7X3 344 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 MADCAM1Q13477 382 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ANKK1Q8NFD2 765 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 TRMT61AQ96FX7 289 aaKnown RBP13.2□□□□□ -0.3
LIMD1-202ENST00000440097 C10orf90Q96M02 699 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ORAI3Q9BRQ5 295 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 RNF121Q9H920 327 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CACYBPQ9HB71 228 aaKnown RBP13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CMAHPQ9Y471 501 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 A0A0G2JPF8 293 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 METTL12A8MUP2 240 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HNRNPCL2B2RXH8 293 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HNRNPCL3B7ZW38 293 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 AKR7A2O43488 359 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 FRS3O43559 492 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 HNRNPCL4P0DMR1 293 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SMIM10L1P0DMW3 83 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CPMP14384 443 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 CBLP22681 906 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 PRKACBP22694 351 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ERP29P30040 261 aaKnown RBP13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SNRPD2P62316 118 aaKnown RBP13.2□□□□□ -0.3
LIMD1-202ENST00000440097 TEKQ02763 1124 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 DEFB133Q30KQ1 61 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 COMTD1Q86VU5 262 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 OR6T1Q8NGN1 323 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 APOBEC4Q8WW27 367 aaKnown RBP13.2□□□□□ -0.3
LIMD1-202ENST00000440097 DEDD2Q8WXF8 326 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 TTC9Q92623 222 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 ZG16BQ96DA0 208 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SMIM10Q96HG1 83 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 WDFY2Q96P53 400 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 MS4A4EQ96PG1 132 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 SEMA6CQ9H3T2 930 aa13.2□□□□□ -0.3
LIMD1-202ENST00000440097 TLR4O00206 839 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 ARHGEF9O43307 516 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 RDH16O75452 317 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 CTSBP07858 339 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 CSF3P09919 207 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 IFI30P13284 250 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 ELAVL4P26378 380 aaKnown RBP13.19□□□□□ -0.3
LIMD1-202ENST00000440097 KIR2DL3P43628 341 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 HMGA2P52926 109 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 MXD1Q05195 221 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 TARDBPQ13148 414 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIMD1-202ENST00000440097 TRMT12Q53H54 448 aaKnown RBP13.19□□□□□ -0.3
LIMD1-202ENST00000440097 RNF44Q7L0R7 432 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 GKN2Q86XP6 184 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 VRK2Q86Y07 508 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 ARL14Q8N4G2 192 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 OR9A4Q8NGU2 314 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 CDS1Q92903 461 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 PRO3102Q9H379 93 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 POMT2Q9UKY4 750 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 DUXAA6NLW8 204 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 FGF17O60258 216 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 FCMRO60667 390 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 CKMT1AP12532 417 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 AVPR1BP47901 424 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 RUNX1T1Q06455 604 aa13.19□□□□□ -0.3
LIMD1-202ENST00000440097 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIMD1-202ENST00000440097 PTGES3Q15185 160 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms