RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PARP16Q8N5Y8 322 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 DAZAP1Q96EP5 407 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 FZD8Q9H461 694 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 BCAS3Q9H6U6 928 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PLEKHA2Q9HB19 425 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 KCNS2Q9ULS6 477 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RNF225M0QZC1 329 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 SH3BGRLO75368 114 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ADH1BP00325 375 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PAQR3Q6TCH7 311 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 MFSD9Q8NBP5 474 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 OR13C2Q8NGS9 318 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TANKQ92844 425 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ZNF300Q96RE9 604 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 SIX2Q9NPC8 291 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 DNAJC27Q9NZQ0 273 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 CASTOR2A6NHX0 329 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 FGF7P21781 194 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PYCR1P32322 319 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 HFE2Q6ZVN8 426 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 OR2A12Q8NGT7 310 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 OR52N1Q8NH53 320 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 CD200R1Q8TD46 325 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 IMP4Q96G21 291 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 CARS2Q9HA77 564 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 N6AMT1Q9Y5N5 214 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AHSGP02765 367 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 VTNP04004 478 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 HBQ1P09105 142 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 KCNE1P15382 129 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AKR1C4P17516 323 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 DLK1P80370 383 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 CATR1Q13166 79 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TAF9Q16594 264 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PCGF3Q3KNV8 242 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PAGE3Q5JUK9 113 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ZNF75AQ96N20 296 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 NKX6-2Q9C056 277 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 RIMS3Q9UJD0 308 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RASD1Q9Y272 281 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ELOA3CA0A087WX78 387 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 HLA-AP01891 365 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 ARSBP15848 533 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 EVI2BP34910 448 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 MAP4K2Q12851 820 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TANGO2Q6ICL3 276 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RHOUQ7L0Q8 258 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 VRK3Q8IV63 474 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 GLB1L2Q8IW92 636 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 FBXO16Q8IX29 292 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 SFXN2Q96NB2 322 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TMPRSS4Q9NRS4 437 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 LRRC37A3O60309 1634 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 MUSKO15146 869 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 DCTP40126 519 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AKR1C2P52895 323 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 VTCN1Q7Z7D3 282 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ANKK1Q8NFD2 765 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 HRASLS5Q96KN8 279 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 SLC22A14Q9Y267 594 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 MRPS23Q9Y3D9 190 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 V9GY05 133 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 BCL9O00512 1426 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AGXTP21549 392 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RAB11AP62491 216 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 KATNB1Q9BVA0 655 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ACSS1Q9NUB1 689 aaPredicted RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 RYDENQ9NUL5 291 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 GAR1Q9NY12 217 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 GPSM3Q9Y4H4 160 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 NOTCH3Q9UM47 2321 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RPS10-NUDT3A0A1W2PQS6 291 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 C2orf72A6NCS6 295 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 CALCBP10092 127 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 RPS10P46783 165 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 TMEM62Q0P6H9 643 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 UGT8Q16880 541 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 OR10K2Q6IF99 312 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ACOT7LQ6ZUV0 252 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 OR13C3Q8NGS6 347 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 FEVQ99581 238 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 SUV39H2Q9H5I1 410 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TESQ9UGI8 421 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 HRH3Q9Y5N1 445 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ARFGEF2Q9Y6D5 1785 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 SMIM28A0A1B0GU29 152 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 K7ERU9 68 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 TSPAN3O60637 253 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AQP8O94778 261 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 ALPLP05186 524 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 POU2F1P14859 743 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 GABRB3P28472 473 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PSMD8P48556 350 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 AAK1Q2M2I8 961 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 SLC35D3Q5M8T2 416 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 GOLGA7Q7Z5G4 137 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 GCNT2Q8N0V5 402 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 NFKBIDQ8NI38 313 aa6.81□□□□□ -1.32
VPS53-204ENST00000437048 PDLIM5Q96HC4 596 aaKnown RBP6.81□□□□□ -1.32
VPS53-204ENST00000437048 LMAN1LQ9HAT1 526 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms