RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CGAP01215 116 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 ACP2P11117 423 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 ZNF17P17021 662 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 TBXA2RP21731 343 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 MANFP55145 182 aaKnown RBP13.02□□□□□ -0.33
SDC1-204ENST00000429035 PRR5P85299 388 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 CCDC153Q494R4 210 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 GALNTL6Q49A17 601 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 C20orf204Q6ZNR8 217 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 WFDC8Q8IUA0 241 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 WDR75Q8IWA0 830 aaKnown RBP13.02□□□□□ -0.33
SDC1-204ENST00000429035 LRRC75A-AS1Q8N1F1 130 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 CIARTQ8N365 385 aaPredicted RBP13.02□□□□□ -0.33
SDC1-204ENST00000429035 COX18Q8N8Q8 333 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 CDRT4Q8N9R6 151 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 OR6K3Q8NGY3 331 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.02□□□□□ -0.33
SDC1-204ENST00000429035 NUDT8Q8WV74 236 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 ZBED6CLQ96FA7 236 aaPredicted RBP13.02□□□□□ -0.33
SDC1-204ENST00000429035 COX4I2Q96KJ9 171 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 NPAS1Q99742 590 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 PIP5K1AQ99755 562 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 IQCGQ9H095 443 aaKnown RBP13.02□□□□□ -0.33
SDC1-204ENST00000429035 C12orf49Q9H741 205 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 C1orf109Q9NX04 203 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 TAS2R7Q9NYW3 318 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 PRR14LQ5THK1 2151 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 ABCA2Q9BZC7 2435 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 NIPBLQ6KC79 2804 aaeCLIP13.01□□□□□ -0.33
SDC1-204ENST00000429035 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.01□□□□□ -0.33
SDC1-204ENST00000429035 A0A1W2PRB8 838 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 SCDO00767 359 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 COPEO14579 308 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 PLIN3O60664 434 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 NKX2-2O95096 273 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 LY6G6DO95868 133 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 SHBGP04278 402 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 NEFHP12036 1026 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 SDC1P18827 310 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 ME2P23368 584 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 RNF144AP50876 292 aaPredicted RBP13.01□□□□□ -0.33
SDC1-204ENST00000429035 NAA20P61599 178 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 SLC18A2Q05940 514 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 GLYR1Q49A26 553 aaPredicted RBP13.01□□□□□ -0.33
SDC1-204ENST00000429035 BEX5Q5H9J7 111 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 CCNJQ5T5M9 372 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 LIPMQ5VYY2 423 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 ZAR1Q86SH2 424 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 DDIASQ8IXT1 998 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 C4orf33Q8N1A6 199 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 CEP70Q8NHQ1 597 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 GMPPAQ96IJ6 420 aaPredicted RBP13.01□□□□□ -0.33
SDC1-204ENST00000429035 REEP4Q9H6H4 257 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 MED17Q9NVC6 651 aa13.01□□□□□ -0.33
SDC1-204ENST00000429035 WBP11Q9Y2W2 641 aaKnown RBP13.01□□□□□ -0.33
SDC1-204ENST00000429035 FN1P02751 2386 aaKnown RBP13□□□□□ -0.33
SDC1-204ENST00000429035 USF3Q68DE3 2245 aa13□□□□□ -0.33
SDC1-204ENST00000429035 A0A087WZY1 265 aa13□□□□□ -0.33
SDC1-204ENST00000429035 IGLV3-32A0A0A0MS00 114 aa13□□□□□ -0.33
SDC1-204ENST00000429035 ALG1L2C9J202 215 aa13□□□□□ -0.33
SDC1-204ENST00000429035 AZIN1O14977 448 aa13□□□□□ -0.33
SDC1-204ENST00000429035 SS18L1O75177 396 aaPredicted RBP13□□□□□ -0.33
SDC1-204ENST00000429035 NUDT14O95848 222 aa13□□□□□ -0.33
SDC1-204ENST00000429035 CHEK2O96017 543 aa13□□□□□ -0.33
SDC1-204ENST00000429035 ALOX5P09917 674 aa13□□□□□ -0.33
SDC1-204ENST00000429035 CPA3P15088 417 aa13□□□□□ -0.33
SDC1-204ENST00000429035 SFTPDP35247 375 aa13□□□□□ -0.33
SDC1-204ENST00000429035 CCT5P48643 541 aa13□□□□□ -0.33
SDC1-204ENST00000429035 PTH2RP49190 550 aa13□□□□□ -0.33
SDC1-204ENST00000429035 PCYT1AP49585 367 aa13□□□□□ -0.33
SDC1-204ENST00000429035 DNAJB13P59910 316 aa13□□□□□ -0.33
SDC1-204ENST00000429035 GUSBP1Q15486 140 aa13□□□□□ -0.33
SDC1-204ENST00000429035 DUSP5Q16690 384 aa13□□□□□ -0.33
SDC1-204ENST00000429035 PDSS1Q5T2R2 415 aa13□□□□□ -0.33
SDC1-204ENST00000429035 HBMQ6B0K9 141 aa13□□□□□ -0.33
SDC1-204ENST00000429035 ZNF704Q6ZNC4 412 aaPredicted RBP13□□□□□ -0.33
SDC1-204ENST00000429035 C22orf34Q6ZV56 151 aa13□□□□□ -0.33
SDC1-204ENST00000429035 STK32CQ86UX6 486 aa13□□□□□ -0.33
SDC1-204ENST00000429035 OR2T11Q8NH01 316 aa13□□□□□ -0.33
SDC1-204ENST00000429035 OR4C3Q8NH37 302 aa13□□□□□ -0.33
SDC1-204ENST00000429035 OR2V1Q8NHB1 315 aa13□□□□□ -0.33
SDC1-204ENST00000429035 KIF18AQ8NI77 898 aa13□□□□□ -0.33
SDC1-204ENST00000429035 EPS8L3Q8TE67 593 aaKnown RBP13□□□□□ -0.33
SDC1-204ENST00000429035 TMEM171Q8WVE6 324 aa13□□□□□ -0.33
SDC1-204ENST00000429035 CAVIN3Q969G5 261 aa13□□□□□ -0.33
SDC1-204ENST00000429035 CCT7Q99832 543 aa13□□□□□ -0.33
SDC1-204ENST00000429035 BDH2Q9BUT1 245 aa13□□□□□ -0.33
SDC1-204ENST00000429035 ACTR6Q9GZN1 396 aa13□□□□□ -0.33
SDC1-204ENST00000429035 FANCFQ9NPI8 374 aa13□□□□□ -0.33
SDC1-204ENST00000429035 GIN1Q9NXP7 522 aa13□□□□□ -0.33
SDC1-204ENST00000429035 BAIAP2L1Q9UHR4 511 aa13□□□□□ -0.33
SDC1-204ENST00000429035 MID2Q9UJV3 735 aa13□□□□□ -0.33
SDC1-204ENST00000429035 NPIPA5A0A0B4J1W7 369 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 NPIPA7E9PJI5 369 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 KCNK2O95069 426 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 THBDP07204 575 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 LINC00032P0C843 101 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 NPIPA8P0DM63 369 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 HPCAL1P37235 193 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PRIM2P49643 509 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms