RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 RPL38P63173 70 aaKnown RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SIRPAP78324 504 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 IRX1P78414 480 aaPredicted RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 PLCXD2Q0VAA5 305 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 BIKQ13323 160 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 IL23RQ5VWK5 629 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SPATA21Q7Z572 469 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 BTLAQ7Z6A9 289 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 OR4K14Q8NGD5 310 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 OR52R1Q8NGF1 315 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 C10orf82Q8WW14 230 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SMPDL3BQ92485 455 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 FIG4Q92562 907 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 TMBIM1Q969X1 311 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 TM4SF18Q96CE8 201 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 STARD4Q96DR4 205 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 ZC3HAV1LQ96H79 300 aaKnown RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 MS4A3Q96HJ5 214 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 MARK4Q96L34 752 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 FAM107BQ9H098 131 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 WDR41Q9HAD4 459 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 NOP53Q9NZM5 478 aaKnown RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 GIMAP2Q9UG22 337 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 PACSIN3Q9UKS6 424 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 UBDO15205 165 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 ERAL1O75616 437 aaKnown RBP11.65□□□□□ -0.54
LINC00339-202ENST00000416769 BCKDHAP12694 445 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 ZNF708P17019 499 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 MAPK12P53778 367 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 NR1H2P55055 460 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 CORO7P57737 925 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 B3GALT5-AS1P59052 145 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 GSTA3Q16772 222 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 ANKRD34AQ69YU3 496 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 NPSR1Q6W5P4 371 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 GRAMD2AQ8IUY3 354 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 FAM9CQ8IZT9 166 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 CNEP1R1Q8N9A8 125 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 OR5M1Q8NGP8 315 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.65□□□□□ -0.54
LINC00339-202ENST00000416769 C16orf78Q8WTQ4 265 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 WNT2BQ93097 391 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 CNRIP1Q96F85 164 aaPredicted RBP11.65□□□□□ -0.54
LINC00339-202ENST00000416769 TAS2R10Q9NYW0 307 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 FLRT3Q9NZU0 649 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 ZNF639Q9UID6 485 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 EXO1Q9UQ84 846 aaKnown RBP11.65□□□□□ -0.54
LINC00339-202ENST00000416769 POLR3HQ9Y535 204 aaPredicted RBP11.65□□□□□ -0.54
LINC00339-202ENST00000416769 PCDHA9Q9Y5H5 950 aa11.65□□□□□ -0.54
LINC00339-202ENST00000416769 ABCA1O95477 2261 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 GNG14A0A1W2PPG7 69 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 CASKO14936 926 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 HCRTR2O43614 444 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 ZIC3O60481 467 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 ALDOCP09972 364 aaKnown RBP11.64□□□□□ -0.55
LINC00339-202ENST00000416769 PORP16435 677 aaPredicted RBP11.64□□□□□ -0.55
LINC00339-202ENST00000416769 SDC1P18827 310 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 ASMTP46597 345 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 EMDP50402 254 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 KRTAP1-1Q07627 177 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 ZNF763Q0D2J5 394 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 SF3A3Q12874 501 aaKnown RBP eCLIP11.64□□□□□ -0.55
LINC00339-202ENST00000416769 SLC30A6Q6NXT4 461 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 SLC48A1Q6P1K1 146 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 NUP54Q7Z3B4 507 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 IFNEQ86WN2 208 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 UBQLNLQ8IYU4 475 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 C17orf47Q8NEP4 570 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 OR7G1Q8NGA0 311 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 OR4N2Q8NGD1 307 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 LCORQ96JN0 433 aaPredicted RBP11.64□□□□□ -0.55
LINC00339-202ENST00000416769 SFXN2Q96NB2 322 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 CCL19Q99731 98 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 TM9SF2Q99805 663 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 C1orf50Q9BV19 199 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 EBPLQ9BY08 206 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 RTN4RQ9BZR6 473 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 AIG1Q9NVV5 245 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 TRIM33Q9UPN9 1127 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 DLGAP4Q9Y2H0 992 aa11.64□□□□□ -0.55
LINC00339-202ENST00000416769 E9PBE3 544 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 PLAUP00749 431 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 G6PDP11413 515 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 IDO1P14902 403 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 KIR2DL2P43627 348 aaPredicted RBP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 MRPL19P49406 292 aaKnown RBP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 ATP4BP51164 291 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 SUCLG1P53597 346 aaKnown RBP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 DIO3P55073 304 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 CLDN8P56748 225 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 RPP38P78345 283 aaKnown RBP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 C2orf80Q0P641 193 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 MAP4K2Q12851 820 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 HEPACAMQ14CZ8 416 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 SF3B4Q15427 424 aaKnown RBP eCLIP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 ACKR1Q16570 336 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 GKAP1Q5VSY0 366 aaPredicted RBP11.63□□□□□ -0.55
LINC00339-202ENST00000416769 FAM71E1Q6IPT2 247 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 IKBIPQ70UQ0 350 aa11.63□□□□□ -0.55
LINC00339-202ENST00000416769 PLCZ1Q86YW0 608 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms