RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 LRP4O75096 1905 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 ASXL3Q9C0F0 2248 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 A0A075B6Q4 140 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 BTN3A3O00478 584 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 DSCR3O14972 297 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 B3GALT2O43825 422 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 CSO75390 466 aaKnown RBP13.79□□□□□ -0.2
USP4-203ENST00000415188 UPK1BO75841 260 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 CYP7B1O75881 506 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 RAB36O95755 333 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 STATHP02808 62 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 ZNF888P0CJ79 500 aaPredicted RBP13.79□□□□□ -0.2
USP4-203ENST00000415188 TNNI3P19429 210 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 CPN2P22792 545 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 GIPRP48546 466 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 MLLT11Q13015 90 aaPredicted RBP13.79□□□□□ -0.2
USP4-203ENST00000415188 GINS1Q14691 196 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 NR0B2Q15466 257 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 SPHARQ15513 63 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 TBC1D25Q3MII6 688 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 EIPR1Q53HC9 387 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 PERM1Q5SV97 790 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 MFSD12Q6NUT3 480 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 PLEKHG7Q6ZR37 379 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 RASSF6Q6ZTQ3 369 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 BTLAQ7Z6A9 289 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 SLC35F3Q8IY50 421 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 NANOGP1Q8N7R0 232 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 TCEANCQ8N8B7 351 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 OR4K14Q8NGD5 310 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 FLVCR1-AS1Q8TAF5 88 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 PIGXQ8TBF5 258 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 ADAMTS15Q8TE58 950 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 DIO2Q92813 273 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 GIMAP5Q96F15 307 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 C16orf58Q96GQ5 468 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 DEPDC7Q96QD5 511 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 SLC38A2Q96QD8 506 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 YIPF4Q9BSR8 244 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 CDADC1Q9BWV3 514 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 EVA1AQ9H8M9 152 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 SP140LQ9H930 580 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 LYRM4Q9HD34 91 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 ISYNA1Q9NPH2 558 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 EVA1BQ9NVM1 165 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 TVP23BQ9NYZ1 205 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 ZNF624Q9P2J8 865 aaPredicted RBP13.79□□□□□ -0.2
USP4-203ENST00000415188 ENTPD2Q9Y5L3 495 aa13.79□□□□□ -0.2
USP4-203ENST00000415188 WASHC1A8K0Z3 465 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 LMO7DNF2Z398 122 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 AP3D1O14617 1153 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 MYL12BO14950 172 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 KIAA0513O60268 411 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 SNX4O95219 450 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 OR5F1O95221 314 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 MED26O95402 600 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 CCNYL3P0C7X3 344 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 C8orf89P0DMQ9 161 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 PORP16435 677 aaPredicted RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 TGFBR1P36897 503 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ACTR1BP42025 376 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 STAT5AP42229 794 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 PSMD7P51665 324 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ACTR1AP61163 376 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 EFNB1P98172 346 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 CHRNEQ04844 493 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 CDC20Q12834 499 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 KRR1Q13601 381 aaKnown RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 SSX1Q16384 188 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 DECR1Q16698 335 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ALG11Q2TAA5 492 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ZNF750Q32MQ0 723 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 SOWAHCQ53LP3 525 aaPredicted RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 SYT14P1Q58G82 188 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 C3orf38Q5JPI3 329 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 MANEAQ5SRI9 462 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 C6orf132Q5T0Z8 1188 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 SLC27A4Q6P1M0 643 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 USP53Q70EK8 1073 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ABHD13Q7L211 337 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 RD3Q7Z3Z2 195 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 CYP4Z2PQ8N1L4 340 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 OR2L13Q8N349 312 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 GALNT6Q8NCL4 622 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 SNIP1Q8TAD8 396 aaKnown RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 TMEM163Q8TC26 289 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 FGF11Q92914 225 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 OR2A14Q96R47 310 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 OR2A5Q96R48 311 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 CENPOQ9BU64 300 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 TEX12Q9BXU0 123 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 MTHFD2LQ9H903 347 aaPredicted RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 FGF20Q9NP95 211 aaPredicted RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 KRCC1Q9NPI7 259 aaPredicted RBP13.78□□□□□ -0.2
USP4-203ENST00000415188 TAS2R16Q9NYV7 291 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 KCMF1Q9P0J7 381 aa13.78□□□□□ -0.2
USP4-203ENST00000415188 ATRXP46100 2492 aa13.77□□□□□ -0.2
USP4-203ENST00000415188 IGSF10Q6WRI0 2623 aa13.77□□□□□ -0.2
USP4-203ENST00000415188 SMG1Q96Q15 3661 aaKnown RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms